CB304593

Overview
NameCB304593
Unique NameCB304593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4836 contig Csv1_Contig4836:286..836. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304593 vs. ExPASy Swiss-Prot
Match: PSA2_CARAU (Proteasome subunit alpha type-2 OS=Carassius auratus GN=psma2 PE=2 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 2.666e-15
Identity = 42/76 (55.26%), Postives = 54/76 (71.05%), Query Frame = -1
Query:  324 KASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISXXXXXXXXXXXXXEFRVLTPNEIRDYLAEV 551
            KA+AMGK+  N KTFLEKRY E++EL+DA+HTAILTLKE FEGQ++              FR L+P E++DYLA +
Sbjct:  159 KATAMGKSYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMT-EENIEVGICNEAGFRRLSPAEVKDYLAAI 233          
BLAST of CB304593 vs. ExPASy Swiss-Prot
Match: PSA2_DICDI (Proteasome subunit alpha type-2 OS=Dictyostelium discoideum GN=psmA2 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.849e-14
Identity = 35/73 (47.95%), Postives = 55/73 (75.34%), Query Frame = -1
Query:  333 KASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISXXXXXXXXXXXXXEFRVLTPNEIRDYL 551
            KA+A+GKN+ ++KTFLEKRY +++E++DA+ TA++T+KEGFE Q++             EF++LTP +I+DYL
Sbjct:  157 KATAIGKNMVSSKTFLEKRYSDDLEIEDAIQTALITIKEGFETQLTEFNMELAIIGKNQEFKILTPAQIKDYL 229          
BLAST of CB304593 vs. ExPASy Swiss-Prot
Match: PSA2_TRYBB (Proteasome subunit alpha type-2 OS=Trypanosoma brucei brucei PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.238e-12
Identity = 35/76 (46.05%), Postives = 53/76 (69.74%), Query Frame = -1
Query:  324 KASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISXXXXXXXXXXXXXEFRVLTPNEIRDYLAEV 551
            KA+++GK   +A+TFLEKRY  EME++DAVHTA+LTLKEGF+G+++              F +LT  +++DYL ++
Sbjct:  157 KATSIGKGSPDARTFLEKRYTNEMEIEDAVHTALLTLKEGFDGRMT-AENTQVGRVVEGRFELLTVEQLKDYLDQI 231          
BLAST of CB304593 vs. ExPASy Swiss-Prot
Match: PSA2_SCHPO (Probable proteasome subunit alpha type-2 OS=Schizosaccharomyces pombe GN=SPCC1442.06 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.369e-11
Identity = 41/87 (47.13%), Postives = 53/87 (60.92%), Query Frame = -1
Query:  324 KASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQI-----------SXXXXXXXXXXXXXEFRVLTPNEIRDYLAEV 551
            KA+A+GK+ + AKTFLEKRY +E+ELDDAVHTAIL LKE FEG++           +              F  L+ +EIRDYL +V
Sbjct:  159 KATAIGKSSTAAKTFLEKRYNDELELDDAVHTAILALKETFEGELTEDNIEIAVVSTKPTDSGIVGVPGGHFCRLSQSEIRDYLDQV 245          
BLAST of CB304593 vs. ExPASy Swiss-Prot
Match: PSA2_NEUCR (Probable proteasome subunit alpha type-2 OS=Neurospora crassa GN=B14D6.510 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.335e-11
Identity = 39/91 (42.86%), Postives = 50/91 (54.95%), Query Frame = -1
Query:  324 KASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQIS---------------XXXXXXXXXXXXXEFRVLTPNEIRDYLAEV 551
            KA+A+GKN + AKTFLEKRY E +EL+DAVH A+LTLKE  EG+++                             FR L+P EI DYL  +
Sbjct:  159 KATAIGKNATTAKTFLEKRYTEGLELEDAVHIALLTLKETIEGEMNGDTIEIGIVGPPADHLLGVEGVEGAKGPRFRKLSPQEIEDYLTNL 249          
The following BLAST results are available for this feature:
BLAST of CB304593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PSA2_CARAU2.666e-1555.26Proteasome subunit alpha type-2 OS=Carassius aurat... [more]
PSA2_DICDI3.849e-1447.95Proteasome subunit alpha type-2 OS=Dictyostelium d... [more]
PSA2_TRYBB1.238e-1246.05Proteasome subunit alpha type-2 OS=Trypanosoma bru... [more]
PSA2_SCHPO1.369e-1147.13Probable proteasome subunit alpha type-2 OS=Schizo... [more]
PSA2_NEUCR2.335e-1142.86Probable proteasome subunit alpha type-2 OS=Neuros... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_A10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_A10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304593 ID=CB304593; Name=CB304593; organism=Citrus sinensis; type=EST; length=551bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAGAGAAGAAACCGAATT
AAATCTTAAATTCTTCCATCAAAACGAATAAAACCTCCAATTCTTTCATC
AAAACTACAGGTAGTTCCACTACTGATCACATTAAAGTCCATATGCTTGC
TTAACAAAATCTCCGATTTCTTCATCAAAACTACAGATAGTTCCACTACT
GATCACATTAATGTCTGTAGGGCTTGCTTAGGACTTTCATTTTATCATAT
TCAATCATCTCTGACAAACGAACATCAAATAACATTCTTCTGCTTTCTTC
AATAGAGGAAAAGTAATTTACTCCACTTCAGCCAAGTAATCACGAATTTC
ATTTGGAGTCAATACTCTGAACTCTTTCTTTTCACCAATTATGCCAATCT
CAATGTTTTTTTCAGAAATCTGTCCTTCAAACCCTTCCTTTAGTGTCAAT
ATTGCCGTGTGGACAGCATCATCGAGCTCCATTTCCTCTACATACCTCTT
CTCAAGAAATGTCTTTGCATTGGAGACATTTTTCCCCATTGCTGAAGCTT
T
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