CB304595

Overview
NameCB304595
Unique NameCB304595
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3294 contig Csv1_Contig3294:733..1416. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304595 vs. ExPASy Swiss-Prot
Match: DOM34_SCHPO (Protein dom34 OS=Schizosaccharomyces pombe GN=dom34 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.525e-30
Identity = 67/147 (45.58%), Postives = 102/147 (69.39%), Query Frame = -2
Query:  225 LRPIIENKSRIILVHTSSGYKHSLREVLDAPNVVNMVKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRNFDITTRQKYVNLVTSVKDSGGTAHIFSFMHVSGEQLGQLTGIAAILRFPLPDLEDI 665
            L+ I+++K++ +++H+S+G+ HSL E+L  P V + + DTK  QE++ L  F++++  D  +A YGP HV  A E  A+  LLI+D LFR+ DI TR+K+V+LV  VK+     +IFS +H SG+QL  L+GIAAIL +P+ D EDI
Sbjct:  230 LKQIVKSKNKFVILHSSTGHIHSLNEILKDPAVESKLADTKYVQEIRVLNKFYDVMNEDDRKAWYGPNHVLKAFELGAIGELLISDSLFRSSDIATRKKWVSLVEGVKEINCPVYIFSSLHESGKQLDLLSGIAAILTYPV-DEEDI 375          
BLAST of CB304595 vs. ExPASy Swiss-Prot
Match: DOM34_YEAST (Protein DOM34 OS=Saccharomyces cerevisiae GN=DOM34 PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 8.831e-26
Identity = 58/150 (38.67%), Postives = 91/150 (60.67%), Query Frame = -2
Query:  228 ERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVVNMVKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRNFDITTRQKYVNLVTSVKDSGGTAHIFSFMHVSGEQLGQLTGIAAILRFPLPDLED 677
            E    + I++NK    + H S+GY   + EVL  P   + ++DTK ++E+  + +F   L  D  +A YG K V  A E  A+  LL+TD +  + +I  R++Y+ L+ SV+ +GG A + S +H  GE+L QLTGIA IL++PLPDL++
Sbjct:  232 EEEHNKKILDNKGMFFIAHCSTGYLQGINEVLKNPLYASKLQDTKYSKEIMVMDEFLLHLNKDDDKAWYGEKEVVKAAEYGAISYLLLTDKVLHSDNIAQREEYLKLMDSVESNGGKALVLSTLHSLGEELDQLTGIACILKYPLPDLDE 381          
BLAST of CB304595 vs. ExPASy Swiss-Prot
Match: PELO_METST (Protein pelota homolog OS=Methanosphaera stadtmanae (strain DSM 3091) GN=pelA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11
Identity = 41/132 (31.06%), Postives = 67/132 (50.76%), Query Frame = -2
Query:  243 RIILVHTSSGYKHSLREVLDAPNVVNMVKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRNFDITTRQKYVNLVTSVKDSGGTAHIFSFMHVSGEQLGQLTGIAAILRFPL 638
            ++IL  T +G    ++EVL    + ++ KD K A+E   +      +        YG K V  A    AV+ LL+ +DL R+ +I       N++ +V++ GG   I S  H +G+QL  L  +AA LR+P+
Sbjct:  226 KVILESTGAGGHAGIQEVLKNGLIESLSKDAKIAKEAALVNKLLEQIGKSSNTVTYGKKQVITASNMGAVEKLLVLEDLVRDKNIQ------NIMNTVENMGGVVTIISSQHDAGQQLKALGSLAAFLRYPI 351          
The following BLAST results are available for this feature:
BLAST of CB304595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
DOM34_SCHPO4.525e-3045.58Protein dom34 OS=Schizosaccharomyces pombe GN=dom3... [more]
DOM34_YEAST8.831e-2638.67Protein DOM34 OS=Saccharomyces cerevisiae GN=DOM34... [more]
PELO_METST2.758e-1131.06Protein pelota homolog OS=Methanosphaera stadtmana... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_B02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_B02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304595 ID=CB304595; Name=CB304595; organism=Citrus sinensis; type=EST; length=684bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAATTAATGCTTTATTTCA
TTCAATGGGAGATATCAAATACAGCATATATACGTAATCCTGTATAAGTT
AATTACAAATTGCAACTGAAATCACTAAATGATTTATAAAAATGGCTAAT
ATACAAACATGCTAATACCAGCAATGATATATTTAAAATCATTTATGCAT
TTCTTACGCAAACGTTCACATCTCAATGTCTTCTAAATCCGGAAGAGGAA
ATCGAAGGATTGCAGCAATGCCAGTCAATTGTCCTAGTTGTTCTCCTGAG
ACATGCATAAATGAAAATATATGAGCAGTGCCTCCTGAATCCTTAACCGA
GGTGACCAAATTAACATACTTCTGCCTTGTAGTGATATCAAAATTCCTGA
AAAGATCATCTGTGATTAAAAGTGTTTGAACAGCCATTCGCTCATGGGCA
ACTTCCACATGCTTTGGTCCATAACATGCACGTGTAGGATCATTTGTTAG
CATGTTGAAGAAGTCCTTGAGAGCTTGGACCTCTTGTGCTGCTTTGGTGT
CTTTGACCATGTTCACTACATTTGGTGCATCCAATACCTCTCTCAAACTA
TGCTTGTATCCAGAACTTGTATGGACAAGAATTATGCGTGACTTGTTCTC
AATAATTGGTCTCAACTGCCTTCTTTCNNNCTCT
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