CB304600

Overview
NameCB304600
Unique NameCB304600
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length492
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8536 contig Csv1_Contig8536:1..492. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304600 vs. ExPASy Swiss-Prot
Match: RL3_RAT (60S ribosomal protein L3 OS=Rattus norvegicus GN=Rpl3 PE=1 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 5.138e-27
Identity = 56/89 (62.92%), Postives = 70/89 (78.65%), Query Frame = -2
Query:  225 TEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEGIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 491
            T++D ++K I P+GGF HYG V  D++++KGC VG KKRV+TLR+SLL QT R ALE I LKFIDT+SKFGHGRFQT +EK  + G LK
Sbjct:  305 TDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393          
BLAST of CB304600 vs. ExPASy Swiss-Prot
Match: RL3_MOUSE (60S ribosomal protein L3 OS=Mus musculus GN=Rpl3 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 5.138e-27
Identity = 56/89 (62.92%), Postives = 70/89 (78.65%), Query Frame = -2
Query:  225 TEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEGIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 491
            T++D ++K I P+GGF HYG V  D++++KGC VG KKRV+TLR+SLL QT R ALE I LKFIDT+SKFGHGRFQT +EK  + G LK
Sbjct:  305 TDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393          
BLAST of CB304600 vs. ExPASy Swiss-Prot
Match: RL3_BOVIN (60S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 5.138e-27
Identity = 56/89 (62.92%), Postives = 70/89 (78.65%), Query Frame = -2
Query:  225 TEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEGIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 491
            T++D ++K I P+GGF HYG V  D++++KGC VG KKRV+TLR+SLL QT R ALE I LKFIDT+SKFGHGRFQT +EK  + G LK
Sbjct:  305 TDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLK 393          
BLAST of CB304600 vs. ExPASy Swiss-Prot
Match: RL3_MACFA (60S ribosomal protein L3 OS=Macaca fascicularis GN=RPL3 PE=2 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 6.710e-27
Identity = 56/89 (62.92%), Postives = 70/89 (78.65%), Query Frame = -2
Query:  225 TEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEGIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 491
            T++D ++K I P+GGF HYG V  D++++KGC VG KKRV+TLR+SLL QT R ALE I LKFIDT+SKFGHGRFQT +EK  + G LK
Sbjct:  305 TDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393          
BLAST of CB304600 vs. ExPASy Swiss-Prot
Match: RL3_HUMAN (60S ribosomal protein L3 OS=Homo sapiens GN=RPL3 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 6.710e-27
Identity = 56/89 (62.92%), Postives = 70/89 (78.65%), Query Frame = -2
Query:  225 TEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEGIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 491
            T++D ++K I P+GGF HYG V  D++++KGC VG KKRV+TLR+SLL QT R ALE I LKFIDT+SKFGHGRFQT +EK  + G LK
Sbjct:  305 TDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393          
BLAST of CB304600 vs. ExPASy Swiss-Prot
Match: RL3_ASHGO (60S ribosomal protein L3 OS=Ashbya gossypii GN=RPL3 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.330e-26
Identity = 57/89 (64.04%), Postives = 68/89 (76.40%), Query Frame = -2
Query:  225 TEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEGIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 491
            TEFDRT+K ITPMGGF HYG VN D++++KG   G +KRVVTLR+SL   TSR ALE + LK+IDT+SKFG GRFQT  EK  + G LK
Sbjct:  297 TEFDRTKKTITPMGGFVHYGAVNNDFVMVKGSIPGTRKRVVTLRKSLYTSTSRRALEEVNLKWIDTASKFGKGRFQTPAEKHAFMGTLK 385          
BLAST of CB304600 vs. ExPASy Swiss-Prot
Match: RL3_KLULA (60S ribosomal protein L3 OS=Kluyveromyces lactis GN=RPL3 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 7.419e-26
Identity = 56/89 (62.92%), Postives = 68/89 (76.40%), Query Frame = -2
Query:  225 TEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEGIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 491
            TEFDRT+K ITPMGGF HYG +N D++++KG   G +KRVVTLR+SL   TSR ALE + LK+IDT+SKFG GRFQT  EK  + G LK
Sbjct:  296 TEFDRTKKTITPMGGFVHYGAINNDFVILKGSIPGTRKRVVTLRKSLYTNTSRKALEEVTLKWIDTASKFGKGRFQTPAEKHAFLGTLK 384          
BLAST of CB304600 vs. ExPASy Swiss-Prot
Match: RL3_YEAST (60S ribosomal protein L3 OS=Saccharomyces cerevisiae GN=RPL3 PE=1 SV=4)

HSP 1 Score: 115.546 bits (288), Expect = 1.266e-25
Identity = 54/89 (60.67%), Postives = 67/89 (75.28%), Query Frame = -2
Query:  225 TEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEGIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 491
            T FDRT+K ITPMGGF HYG +  D++++KGC  G +KR+VTLR+SL   TSR ALE + LK+IDT+SKFG GRFQT  EK  + G LK
Sbjct:  296 TSFDRTKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRKSLYTNTSRKALEEVSLKWIDTASKFGKGRFQTPAEKHAFMGTLK 384          
BLAST of CB304600 vs. ExPASy Swiss-Prot
Match: RL3_ENCCU (60S ribosomal protein L3 OS=Encephalitozoon cuniculi GN=RPL3-1 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.653e-25
Identity = 56/90 (62.22%), Postives = 69/90 (76.67%), Query Frame = -2
Query:  222 TEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEGIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLKA 491
            TEFD TEK I+PMGGFPHYG V  D++++KG  VG +KRVVTLR+SLL+Q    A E + +KF+DTSSK GHGRFQT+ EK  +YG  KA
Sbjct:  290 TEFDLTEKPISPMGGFPHYGEVRNDFIMVKGAVVGARKRVVTLRKSLLRQR---AGEELVIKFVDTSSKIGHGRFQTSAEKKAFYGARKA 376          
BLAST of CB304600 vs. ExPASy Swiss-Prot
Match: RL3B_SCHPO (60S ribosomal protein L3-B OS=Schizosaccharomyces pombe GN=rpl3b PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 3.682e-25
Identity = 55/89 (61.80%), Postives = 67/89 (75.28%), Query Frame = -2
Query:  225 TEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEGIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 491
            T+FD TEK ITPMGGF  YGVV  D++++ G   GP KRV+TLR+SLL  TSR ALE + LK+IDT+SKFGHGRFQT  E  ++ G LK
Sbjct:  296 TDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLK 384          
The following BLAST results are available for this feature:
BLAST of CB304600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL3_RAT5.138e-2762.9260S ribosomal protein L3 OS=Rattus norvegicus GN=R... [more]
RL3_MOUSE5.138e-2762.9260S ribosomal protein L3 OS=Mus musculus GN=Rpl3 P... [more]
RL3_BOVIN5.138e-2762.9260S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=... [more]
RL3_MACFA6.710e-2762.9260S ribosomal protein L3 OS=Macaca fascicularis GN... [more]
RL3_HUMAN6.710e-2762.9260S ribosomal protein L3 OS=Homo sapiens GN=RPL3 P... [more]
RL3_ASHGO3.330e-2664.0460S ribosomal protein L3 OS=Ashbya gossypii GN=RPL... [more]
RL3_KLULA7.419e-2662.9260S ribosomal protein L3 OS=Kluyveromyces lactis G... [more]
RL3_YEAST1.266e-2560.6760S ribosomal protein L3 OS=Saccharomyces cerevisi... [more]
RL3_ENCCU1.653e-2562.2260S ribosomal protein L3 OS=Encephalitozoon cunicu... [more]
RL3B_SCHPO3.682e-2561.8060S ribosomal protein L3-B OS=Schizosaccharomyces ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_B09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_B09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304600 ID=CB304600; Name=CB304600; organism=Citrus sinensis; type=EST; length=492bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAAGCCCAAAAATACCGTA
AGATGTACTAACGCGCAAAAAAGAAACCATGCACAAATGAAGTTTCCAAG
AACTGCCAGGGTAGCCATAGCCATATTAATTCAAAATAGAGACTAAAATG
ACCAAAAATCTTAAATGTTCAAAACTACCCTGAAACCAAAGGCAATCTCT
TCTTCAACTTGGCCAAAATCAAGCCTTGAGCCTTCCATAGTACTTGGCCT
TCTCCTGCGTTGTCTGGAACCGACCATGGCCGAACTTGGAGGATGTGTCA
ATGAACTTGAGCTTAATCCCCTCCAATGCAAGCCTAGACGTCTGCTTCAG
TAGGGACTGCCTTAACGTCACAACACGCTTCTTAGGTCCAACACAGCAGC
CCTTGATCAGCAGGTAATCTTCATTGACTACACCATAGTGGGGGAAGCCT
CCCATTGGGGTGATATCCTTCTCCGTCCTGTCAAATTCAGTC
back to top