CB304600

Overview
NameCB304600
Unique NameCB304600
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length492
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8536 contig Csv1_Contig8536:1..492. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304600 vs. ExPASy Swiss-Prot
Match: RL3A_SCHPO (60S ribosomal protein L3-A OS=Schizosaccharomyces pombe GN=rpl3a PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 3.682e-25
Identity = 55/89 (61.80%), Postives = 67/89 (75.28%), Query Frame = -2
Query:  225 TEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEGIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 491
            T+FD TEK ITPMGGF  YGVV  D++++ G   GP KRV+TLR+SLL  TSR ALE + LK+IDT+SKFGHGRFQT  E  ++ G LK
Sbjct:  296 TDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLK 384          
BLAST of CB304600 vs. ExPASy Swiss-Prot
Match: RL3_CANGA (60S ribosomal protein L3 OS=Candida glabrata GN=RPL3 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 8.203e-25
Identity = 55/89 (61.80%), Postives = 67/89 (75.28%), Query Frame = -2
Query:  225 TEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEGIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 491
            T FDRT+K I PMGGF HYG+VN D++++KG   G KKRVVTLR+SL   TSR A+E + LK+IDT+SKFG GRFQT  EK  + G LK
Sbjct:  296 TNFDRTKKTINPMGGFVHYGMVNNDFVMVKGSIPGCKKRVVTLRKSLYTNTSRKAVEEVTLKWIDTASKFGKGRFQTPAEKHAFMGTLK 384          
BLAST of CB304600 vs. ExPASy Swiss-Prot
Match: RL3_ASPFU (60S ribosomal protein L3 OS=Aspergillus fumigatus GN=rpl3 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 4.071e-24
Identity = 53/89 (59.55%), Postives = 67/89 (75.28%), Query Frame = -2
Query:  225 TEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEGIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 491
            T+FD ++K ITPMGGF  YG V  DY+++KG   G KKRV+TLR++L  QTSR A E ++LK+IDTSSKFGHG FQT +EK  + G LK
Sbjct:  297 TDFDISKKQITPMGGFVRYGEVKNDYIMVKGSVPGVKKRVMTLRKTLYPQTSRRATEKVELKWIDTSSKFGHGAFQTPEEKRAFMGTLK 385          
BLAST of CB304600 vs. ExPASy Swiss-Prot
Match: RL3_NEUCR (60S ribosomal protein L3 OS=Neurospora crassa GN=rpl-3 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.547e-23
Identity = 52/89 (58.43%), Postives = 67/89 (75.28%), Query Frame = -2
Query:  225 TEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEGIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 491
            TE D T+K ITPMGGF  YG +N D++++KG   G KKRV+TLR+S+   TSR ALE ++LK+IDTSS+FGHG FQT  EK ++ G LK
Sbjct:  297 TEVDVTKKKITPMGGFVRYGEINNDFVMVKGSVPGVKKRVMTLRKSMFVHTSRKALEKVELKWIDTSSEFGHGAFQTPAEKKQFQGTLK 385          
BLAST of CB304600 vs. ExPASy Swiss-Prot
Match: RL3_DEBHA (60S ribosomal protein L3 OS=Debaryomyces hansenii GN=RPL3 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.639e-23
Identity = 53/89 (59.55%), Postives = 64/89 (71.91%), Query Frame = -2
Query:  225 TEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEGIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 491
            TEFDRT+K I PMGGF  YG V  D++L+KG   G KKR+VT+R+SL   TSR A E + LK+IDT+SKFG GRFQT  EK  + G LK
Sbjct:  296 TEFDRTKKTINPMGGFVRYGNVKNDFMLLKGSIPGVKKRIVTIRKSLYVDTSRRATENVNLKWIDTASKFGKGRFQTPAEKHAFLGTLK 384          
The following BLAST results are available for this feature:
BLAST of CB304600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL3A_SCHPO3.682e-2561.8060S ribosomal protein L3-A OS=Schizosaccharomyces ... [more]
RL3_CANGA8.203e-2561.8060S ribosomal protein L3 OS=Candida glabrata GN=RP... [more]
RL3_ASPFU4.071e-2459.5560S ribosomal protein L3 OS=Aspergillus fumigatus ... [more]
RL3_NEUCR1.547e-2358.4360S ribosomal protein L3 OS=Neurospora crassa GN=r... [more]
RL3_DEBHA2.639e-2359.5560S ribosomal protein L3 OS=Debaryomyces hansenii ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_B09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_B09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304600 ID=CB304600; Name=CB304600; organism=Citrus sinensis; type=EST; length=492bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAAGCCCAAAAATACCGTA
AGATGTACTAACGCGCAAAAAAGAAACCATGCACAAATGAAGTTTCCAAG
AACTGCCAGGGTAGCCATAGCCATATTAATTCAAAATAGAGACTAAAATG
ACCAAAAATCTTAAATGTTCAAAACTACCCTGAAACCAAAGGCAATCTCT
TCTTCAACTTGGCCAAAATCAAGCCTTGAGCCTTCCATAGTACTTGGCCT
TCTCCTGCGTTGTCTGGAACCGACCATGGCCGAACTTGGAGGATGTGTCA
ATGAACTTGAGCTTAATCCCCTCCAATGCAAGCCTAGACGTCTGCTTCAG
TAGGGACTGCCTTAACGTCACAACACGCTTCTTAGGTCCAACACAGCAGC
CCTTGATCAGCAGGTAATCTTCATTGACTACACCATAGTGGGGGAAGCCT
CCCATTGGGGTGATATCCTTCTCCGTCCTGTCAAATTCAGTC
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