CB304609

Overview
NameCB304609
Unique NameCB304609
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length606
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304609_ssr169 microsatellite CB304609_ssr169:169..186. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6849 contig Csv1_Contig6849:451..1058. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304609 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.255e-22
Identity = 55/74 (74.32%), Postives = 60/74 (81.08%), Query Frame = -1
Query:  262 ILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 483
            ILQISGER+ E+E+KND WHRVERSSGKF+R FRLPDNAKV+QVKASMENGVLTVT           KAIEISG
Sbjct:    1 ILQISGERNVEKEDKNDTWHRVERSSGKFMRSFRLPDNAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIEISG 74          
BLAST of CB304609 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.534e-20
Identity = 47/92 (51.09%), Postives = 63/92 (68.48%), Query Frame = -1
Query:  316 SPMQELLERAPQAHVFKADLPGLRXXXXXXXXXEDRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 591
            SP +   +  P+ HV   D+PGL+         E+R+L++SGER KE+E+K D WHRVERS GKF R+FRLP N  ++ VKA +ENGVLT+T
Sbjct:   65 SPARVDWKETPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENGVLTLT 156          
BLAST of CB304609 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.534e-20
Identity = 57/106 (53.77%), Postives = 69/106 (65.09%), Query Frame = -1
Query:  262 ERAPQAHVFKADLPGLRXXXXXXXXXEDRILQISGERSKEQEE--KND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 570
            +  P AHVF ADLPG+R         +  +L ISGER++E++   KND +WH VERSSGKF RRFRLP  A+V+QV ASM+NGVLTVT           KAI ISG
Sbjct:   45 KETPTAHVFTADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMDNGVLTVTVPKEETKKPQLKAIPISG 150          
BLAST of CB304609 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.828e-20
Identity = 44/85 (51.76%), Postives = 60/85 (70.59%), Query Frame = -1
Query:  316 ERAPQAHVFKADLPGLRXXXXXXXXXEDRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 570
            +  P+ HV   D+PGL+         E+R+L++SGER KE+++K D WHRVERS GKF R+F+LP N  ++ VKA MENGVLT+T
Sbjct:   80 KETPEGHVIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENGVLTLT 164          
BLAST of CB304609 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.875e-18
Identity = 43/91 (47.25%), Postives = 61/91 (67.03%), Query Frame = -1
Query:  319 SPMQELLERAPQAHVFKADLPGLRXXXXXXXXXEDRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 591
            SP +   +   + H    D+PGL+         E+ +L++SGER +E+E+K D+WHRVERS GKF R+F+LPDN  +E VKA +ENGVLT+
Sbjct:   69 SPARVDWKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENGVLTI 159          
BLAST of CB304609 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.215e-17
Identity = 41/80 (51.25%), Postives = 59/80 (73.75%), Query Frame = -1
Query:  316 AHVFKADLPGLRXXXXXXXXXEDRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 555
            AHVF AD+PG+R         E+++L+ISG+R++  EEK ++WHRVERSS +F+R  RLP NA  + V A+++NGVLT+T
Sbjct:   80 AHVFMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALDNGVLTIT 159          
BLAST of CB304609 vs. ExPASy Swiss-Prot
Match: HSP21_SOLPE (17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.779e-14
Identity = 37/82 (45.12%), Postives = 55/82 (67.07%), Query Frame = -1
Query:  316 PQAHVFKADLPGLRXXXXXXXXXEDRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 561
            P ++VF  D+PGL+         ED +L ISGER +E+E++  K+ R+ER  GKF+R+F LP+NA  + + A  ++GVLTVT
Sbjct:   54 PNSYVFVVDMPGLKSGDIKVQVEEDNVLLISGERKREEEKEGAKFIRMERRVGKFMRKFSLPENANTDAISAVCQDGVLTVT 135          
BLAST of CB304609 vs. ExPASy Swiss-Prot
Match: HS232_ORYSJ (23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 4.779e-14
Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = -1
Query:  319 AHVFKADLPGLRXXXXXXXXXEDRILQISGERSKEQ--EEKN--DKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 555
            AH    D+PG+R         ++R+L+ISGER +E+  E+K   D WHR ERS G+F R+ RLPDNA ++ + AS++NGVLTV
Sbjct:   86 AHEVVVDVPGMRKEDLRVEVEDNRVLRISGERRREETTEQKGGGDHWHREERSYGRFWRQLRLPDNADLDSIAASLDNGVLTV 168          
BLAST of CB304609 vs. ExPASy Swiss-Prot
Match: HSP22_MAIZE (17.8 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.151e-14
Identity = 38/86 (44.19%), Postives = 56/86 (65.12%), Query Frame = -1
Query:  316 LERAPQAHVFKADLPGLRXXXXXXXXXEDRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 573
            ++  P A+ F  D+PGL          ++R+L +SGER +E+ E + K+ R+ER  GKF+R+F LPDNA V++V A   +GVLTVT
Sbjct:   59 VKELPGAYAFVVDMPGLGTGDIRVQVEDERVLVVSGERRREEREDDAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVT 144          
BLAST of CB304609 vs. ExPASy Swiss-Prot
Match: HSP21_HELAN (17.9 kDa class II heat shock protein OS=Helianthus annuus GN=HSP17.9 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.098e-13
Identity = 33/86 (38.37%), Postives = 58/86 (67.44%), Query Frame = -1
Query:  316 LERAPQAHVFKADLPGLRXXXXXXXXXEDRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 573
            ++  P ++VF  D+PGL+          D +L ISG+R++E+E++  K+ R+ER  GKF+++F LP++A  +++ A  ++GVLTVT
Sbjct:   55 VKECPNSYVFIVDMPGLKSGDIKVQVERDNVLVISGKRNREEEKEGVKYVRMERRMGKFMKKFALPEDANTDKISAICQDGVLTVT 140          
The following BLAST results are available for this feature:
BLAST of CB304609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
HSP12_SOYBN1.255e-2274.32Class I heat shock protein (Fragment) OS=Glycine m... [more]
HSP41_SOYBN1.534e-2051.0922.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HS166_ORYSJ1.534e-2053.7716.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP41_PEA5.828e-2051.7622.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HSP22_ARATH1.875e-1847.2522.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HS189_ORYSJ1.215e-1751.2518.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP21_SOLPE4.779e-1445.1217.3 kDa class II heat shock protein OS=Solanum pe... [more]
HS232_ORYSJ4.779e-1448.1923.2 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP22_MAIZE8.151e-1444.1917.8 kDa class II heat shock protein OS=Zea mays P... [more]
HSP21_HELAN3.098e-1338.3717.9 kDa class II heat shock protein OS=Helianthus... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_D02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_D02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304609 ID=CB304609; Name=CB304609; organism=Citrus sinensis; type=EST; length=606bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCAAAATATATTTTATTGCA
TCACACTTTTATCATTTAAAAAACTAGTTACAACGCTTGAGACTGGCTCC
TGAAGCTCTTGCAAACACACAAACATAATCACATCAAATTAAACAGGGGG
GAAGGGAAGCTCTTGCAAACACACACACACACACACAAGGGCTTTGCTTT
CGTACCAAATTTATTAGCAAACCAAAGACACAATCTTGAAAACATTTACA
CTTATCACTTAGCCAGAGATCTCAATGGCCTTAACTTCAGGTTTCTTCTC
CTCCTGTTTAGGAACAGTCACTGTGAGCACACCATTCTCCATGCTGGCCT
TAACCTGCTCCACCTTAGCATTGTCGGGCAACCTGAACCTCCTCAGGAAC
TTGCCACTGCTCCTCTCGACGCGATGCCACTTGTCATTCTTCTCTTCCTG
CTCCTTGCTCCTCTCCCCGCTTATCTGCAGAATCCTGTCCTCTTCAACCT
CAACTTTCACTTCTTCTTTCCTCAGCCCTGGAAGATCAGCCTTGAATACA
TGAGCCTGAGGAGCTCTTTCCAGCAATTCTTGCATTGGCGAATTGGGATG
TTTCCC
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