CB304609

Overview
NameCB304609
Unique NameCB304609
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length606
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304609_ssr169 microsatellite CB304609_ssr169:169..186. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6849 contig Csv1_Contig6849:451..1058. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304609 vs. ExPASy Swiss-Prot
Match: HS176_ARATH (17.6 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.965e-12
Identity = 33/83 (39.76%), Postives = 52/83 (62.65%), Query Frame = -1
Query:  316 PQAHVFKADLPGLRXXXXXXXXXEDRILQISGERSKEQEEKND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 561
            P A+ F  D+PG++          D +L +SGER +E +E    K+ R+ER  GKF+R+F+LP+NA ++++ A   +GVL VT
Sbjct:   53 PNAYAFVVDMPGIKGDEIKVQVENDNVLVVSGERQRENKENEGVKYVRMERRMGKFMRKFQLPENADLDKISAVCHDGVLKVT 135          
BLAST of CB304609 vs. ExPASy Swiss-Prot
Match: HS157_ARATH (15.7 kDa heat shock protein, peroxisomal OS=Arabidopsis thaliana GN=HSP15.7 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.965e-12
Identity = 37/84 (44.05%), Postives = 51/84 (60.71%), Query Frame = -1
Query:  319 AHVFKADLPGLRXXXXXXXXXEDRILQISGERSKEQEEKNDKWHRVERSS-----GKFLRRFRLPDNAKVEQVKASMENGVLTV 555
            +H+FK ++PG           E  +L I GE  KE++++N  WH  ER +      +FLRR  LP+N KV+QVKA +ENGVLTV
Sbjct:   32 SHIFKINVPGYNKEDIKVQIEEGNVLSIRGEGIKEEKKENLVWHVAEREAFSGGGSEFLRRIELPENVKVDQVKAYVENGVLTV 115          
BLAST of CB304609 vs. ExPASy Swiss-Prot
Match: SP21_STIAU (Spore protein SP21 OS=Stigmatella aurantiaca GN=hspA PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.435e-11
Identity = 31/81 (38.27%), Postives = 53/81 (65.43%), Query Frame = -1
Query:  316 QAHVFKADLPGLRXXXXXXXXXEDRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 558
            +A++FKADLPG+           DR+  +SG+R +E+ E++++++  ER+ G F R F LP+    + V+A ++NGVLT+T
Sbjct:   63 EAYIFKADLPGVDEKDIEVTLTGDRV-SVSGKREREKREESERFYAYERTFGSFSRAFTLPEGVDGDNVRADLKNGVLTLT 142          
The following BLAST results are available for this feature:
BLAST of CB304609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
HS176_ARATH9.965e-1239.7617.6 kDa class II heat shock protein OS=Arabidopsi... [more]
HS157_ARATH9.965e-1244.0515.7 kDa heat shock protein, peroxisomal OS=Arabid... [more]
SP21_STIAU8.435e-1138.27Spore protein SP21 OS=Stigmatella aurantiaca GN=hs... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_D02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_D02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304609 ID=CB304609; Name=CB304609; organism=Citrus sinensis; type=EST; length=606bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCAAAATATATTTTATTGCA
TCACACTTTTATCATTTAAAAAACTAGTTACAACGCTTGAGACTGGCTCC
TGAAGCTCTTGCAAACACACAAACATAATCACATCAAATTAAACAGGGGG
GAAGGGAAGCTCTTGCAAACACACACACACACACACAAGGGCTTTGCTTT
CGTACCAAATTTATTAGCAAACCAAAGACACAATCTTGAAAACATTTACA
CTTATCACTTAGCCAGAGATCTCAATGGCCTTAACTTCAGGTTTCTTCTC
CTCCTGTTTAGGAACAGTCACTGTGAGCACACCATTCTCCATGCTGGCCT
TAACCTGCTCCACCTTAGCATTGTCGGGCAACCTGAACCTCCTCAGGAAC
TTGCCACTGCTCCTCTCGACGCGATGCCACTTGTCATTCTTCTCTTCCTG
CTCCTTGCTCCTCTCCCCGCTTATCTGCAGAATCCTGTCCTCTTCAACCT
CAACTTTCACTTCTTCTTTCCTCAGCCCTGGAAGATCAGCCTTGAATACA
TGAGCCTGAGGAGCTCTTTCCAGCAATTCTTGCATTGGCGAATTGGGATG
TTTCCC
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