CB304613

Overview
NameCB304613
Unique NameCB304613
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length583
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304613_ssr188 microsatellite CB304613_ssr188:188..199. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13803 contig Csv1_Contig13803:82..664. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304613 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 6.613e-31
Identity = 58/107 (54.21%), Postives = 82/107 (76.64%), Query Frame = -3
Query:  252 ALLLCILVTAPVANAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 572
            AL++ + +   VA+AITC QV+A+LAPCI ++R+GG  PP  CC+G++++NG A+TTPDRQAACNCLK   G++ G+ P  A  LP +CGV +PYKIS ST+C+ V+
Sbjct:   10 ALVVALCMAVSVAHAITCSQVSANLAPCINYVRSGGAVPPA-CCNGIKTINGLAKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CB304613 vs. ExPASy Swiss-Prot
Match: NLTP2_TOBAC (Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.598e-30
Identity = 61/110 (55.45%), Postives = 79/110 (71.82%), Query Frame = -3
Query:  252 LVCALLLCILVTAPVANAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 581
            + C ++LC++V AP A A++CGQV + LAPC+P+L+  GR P   CC GV+ L GAA++  DR+ AC CLK A   I+GI    AAGLP  CGV IPYKISPSTDCS+V+
Sbjct:    7 IACFVVLCMVVVAPHAEALSCGQVQSGLAPCLPYLQ--GRGPLGSCCGGVKGLLGAAKSLSDRKTACTCLKSAANAIKGIDMGKAAGLPGACGVNIPYKISPSTDCSKVQ 114          
BLAST of CB304613 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 9.549e-30
Identity = 57/92 (61.96%), Postives = 74/92 (80.43%), Query Frame = -3
Query:  252 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 527
            ITCGQV+++LAPCIP++R GG  PP  CC+G+R++N  ARTTPDRQAACNCLK+   ++ G+ PN AA LP +CGV IPYKIS ST+C+ V+
Sbjct:    1 ITCGQVSSALAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCATVK 91          
BLAST of CB304613 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLPN (Non-specific lipid-transfer protein 2 OS=Solanum pennellii GN=LTP2 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.247e-29
Identity = 62/110 (56.36%), Postives = 77/110 (70.00%), Query Frame = -3
Query:  252 LVCALLLCILVTAPVANAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 581
            + C +LLC++V AP A A+TCGQVT++LAPC+P+L   G  P   CC GV+ L G A+TT DRQ AC CLK A  +  G+    AA LPS C V IPYKISPSTDCS+V+
Sbjct:    7 IACFVLLCMVVVAPHAEALTCGQVTSTLAPCLPYLMNRG--PLGGCCGGVKGLLGQAQTTVDRQTACTCLKSAASSFTGLDLGKAASLPSTCSVNIPYKISPSTDCSKVQ 114          
BLAST of CB304613 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLLC (Non-specific lipid-transfer protein 2 OS=Solanum lycopersicum GN=LE16 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.629e-29
Identity = 60/110 (54.55%), Postives = 78/110 (70.91%), Query Frame = -3
Query:  252 LVCALLLCILVTAPVANAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 581
            + C ++ C++V AP A +++CG+VT+ LAPC+P+L   GR P   CC GV+ L GAA+T  DR+ AC CLK A  +I+GI    AAGLP  CGV IPYKISPSTDCS V+
Sbjct:    7 IACFVVFCMVVVAPHAESLSCGEVTSGLAPCLPYLE--GRGPLGGCCGGVKGLLGAAKTPEDRKTACTCLKSAANSIKGIDTGKAAGLPGVCGVNIPYKISPSTDCSTVQ 114          
BLAST of CB304613 vs. ExPASy Swiss-Prot
Match: NLTP_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 3.629e-29
Identity = 64/110 (58.18%), Postives = 77/110 (70.00%), Query Frame = -3
Query:  255 LVCALLLCILVTAPVANA-ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 581
            L CA+LLCI+V AP A A ITCG V++ LAPCI +L+ G       CC G+++LN AA TTPDR+ ACNCLK A   I+GI    AAGLP  CGV IPY ISPST+C+ V
Sbjct:    9 LACAVLLCIVVAAPYAEAGITCGMVSSKLAPCIGYLKGGPL--GGGCCGGIKALNAAAATTPDRKTACNCLKSAANAIKGINYGKAAGLPGMCGVHIPYAISPSTNCNAV 116          
BLAST of CB304613 vs. ExPASy Swiss-Prot
Match: NLTP4_LENCU (Non-specific lipid-transfer protein 4 (Fragment) OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.739e-29
Identity = 62/107 (57.94%), Postives = 79/107 (73.83%), Query Frame = -3
Query:  252 LLLCILVTAPVAN-AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 569
            L++C++V AP+A  AI+CG VT+ L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNCLK A G+I  +  N AA LP +CGV IPYKIS ST+C+ V+
Sbjct:    4 LVMCMVVIAPMAEGAISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 109          
BLAST of CB304613 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLCI (Non-specific lipid-transfer protein 2 OS=Solanum chilense PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.739e-29
Identity = 62/110 (56.36%), Postives = 77/110 (70.00%), Query Frame = -3
Query:  252 LVCALLLCILVTAPVANAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 581
            + C +LLC++V AP A A+TCGQVT++LAPC+P+L   G  P   CC GV+ L G A+TT DRQAAC CLK A  +   +    AA LPS C V IPYKISPSTDCS+V+
Sbjct:    7 IACFVLLCMVVVAPHAEALTCGQVTSTLAPCLPYLMNRG--PLGGCCGGVKGLLGQAQTTVDRQAACACLKSAASSFTDLDLGKAASLPSTCNVNIPYKISPSTDCSKVQ 114          
BLAST of CB304613 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 4.739e-29
Identity = 57/92 (61.96%), Postives = 73/92 (79.35%), Query Frame = -3
Query:  252 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 527
            ITCGQV++SLAPCI ++R GG  PP  CC+G+R++N  ARTTPDR+ ACNCLK+  G+I G+ PN AA LP +CGV IPYKIS ST+C+ V+
Sbjct:    1 ITCGQVSSSLAPCIGYVRGGGAVPPA-CCNGIRNVNNLARTTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCATVK 91          
BLAST of CB304613 vs. ExPASy Swiss-Prot
Match: NLTP6_LENCU (Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.189e-29
Identity = 64/112 (57.14%), Postives = 81/112 (72.32%), Query Frame = -3
Query:  252 LVCALL-LCILVTAPVAN-AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 581
            L C +L +C++V AP+A  AI+CG VT+ L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNCLK A G+I  +  N AA LP +CGV IPYKIS ST+C+ V+
Sbjct:    7 LACVVLVMCMVVIAPMAEGAISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVDIPYKISTSTNCNTVK 117          
The following BLAST results are available for this feature:
BLAST of CB304613 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
NLTP_PYRCO6.613e-3154.21Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP2_TOBAC5.598e-3055.45Non-specific lipid-transfer protein 2 OS=Nicotiana... [more]
NLTP1_PRUPE9.549e-3061.96Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP2_SOLPN1.247e-2956.36Non-specific lipid-transfer protein 2 OS=Solanum p... [more]
NLTP2_SOLLC1.629e-2954.55Non-specific lipid-transfer protein 2 OS=Solanum l... [more]
NLTP_SPIOL3.629e-2958.18Non-specific lipid-transfer protein OS=Spinacia ol... [more]
NLTP4_LENCU4.739e-2957.94Non-specific lipid-transfer protein 4 (Fragment) O... [more]
NLTP2_SOLCI4.739e-2956.36Non-specific lipid-transfer protein 2 OS=Solanum c... [more]
NLTP1_PRUAR4.739e-2961.96Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP6_LENCU6.189e-2957.14Non-specific lipid-transfer protein 6 OS=Lens culi... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_D08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_D08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304613 ID=CB304613; Name=CB304613; organism=Citrus sinensis; type=EST; length=583bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGATAATACCACAAAATAA
CTATAATTAATCACTCAAAACACAGATCGCGTTTACATATTTAATATGAC
ATAAAAAGCAAATATACAAACATGACATGAGAGTGAAACTCATACAAGTG
GAGACTCGTTCGGACAAAGAAATTAACATAGATATTCTTTATTTATTTAT
TCTTCTCAGTCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTTC
ACCTGACCCTAGAGCAGTCGGTGCTGGGGCTGATCTTGTAAGGAATTCTG
ACTCCACATTGACTAGGAAGGCCAGCGGCAACATTAGGTTTGATGCCGCG
GATTGTTCCGTAAGCTCGTTTCAAGCAGTTGCATGCAGCTTGGCGGTCAG
GGGTGGTTCTGGCGGCGCCGTTGAGAGACCTGACGCCGCTACAGCATGGC
GGTGGAGGAAAACGCCCTCCAGTTCTCAAGAAAGGGATGCATGGAGCCAA
GGAGGCTGTCACCTGCCCGCATGTTATGGCATTAGCCACCGGGGCAGTCA
CCAGAATGCACAAAAGCAAAGCACAAACAAGCT
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