CB304613

Overview
NameCB304613
Unique NameCB304613
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length583
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304613_ssr188 microsatellite CB304613_ssr188:188..199. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13803 contig Csv1_Contig13803:82..664. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304613 vs. ExPASy Swiss-Prot
Match: NLTP2_LENCU (Non-specific lipid-transfer protein 2 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.084e-29
Identity = 63/112 (56.25%), Postives = 81/112 (72.32%), Query Frame = -3
Query:  252 LVCALL-LCILVTAPVAN-AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 581
            L C +L +C++V AP+A  AI+CG VT+ L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNCLK A G+I  +  N AA LP +CGV IPYKIS +T+C+ V+
Sbjct:    7 LACVVLVICMVVIAPMAEGAISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTTTNCNTVK 117          
BLAST of CB304613 vs. ExPASy Swiss-Prot
Match: NLTP1_LENCU (Non-specific lipid-transfer protein 1 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.056e-28
Identity = 59/108 (54.63%), Postives = 81/108 (75.00%), Query Frame = -3
Query:  252 ALLLCILVTAPVANA-ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 572
            AL+  ++++AP+A A I+CG V+ +L PC+ +L+ GG  P P CC GV+ LNGAARTT DR+AACNCLK + G+I G+KP   A LP +CGVR+PY IS ST+C+ +R
Sbjct:   11 ALMCMVVISAPMAEAAISCGTVSGALVPCLTYLK-GGPGPSPQCCGGVKRLNGAARTTIDRRAACNCLKSSAGSISGLKPGNVATLPGKCGVRLPYTISTSTNCNTIR 117          
BLAST of CB304613 vs. ExPASy Swiss-Prot
Match: NLTP_CICAR (Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.379e-28
Identity = 62/111 (55.86%), Postives = 80/111 (72.07%), Query Frame = -3
Query:  252 LVC-ALLLCILVTAPVANAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 581
            +VC AL++CI++     +AITCG+V  +LAPC+ +L+ GG  P   CC GVR+LN AA TTPDRQAACNCLK A G+I  +  N AA LP +C V IPYKIS ST+C+ +R
Sbjct:    6 VVCVALIMCIVIAPMAESAITCGRVDTALAPCLGYLQ-GGPGPSAQCCGGVRNLNSAAVTTPDRQAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCATIR 115          
BLAST of CB304613 vs. ExPASy Swiss-Prot
Match: NLTP3_LENCU (Non-specific lipid-transfer protein 3 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.352e-28
Identity = 62/112 (55.36%), Postives = 79/112 (70.54%), Query Frame = -3
Query:  252 LVC-ALLLCILVTAPVANA-ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 581
            L C AL++C++V AP+A A ++CG VT  LAPCIP+L TGG  P   CC+GV+ L  AA TT DRQAACNCLK A G I  + P  AA LP +C V IPYKIS +T+C+ ++
Sbjct:    7 LACVALVMCMVVIAPMAEAAVSCGTVTGDLAPCIPYL-TGGAGPTDSCCAGVKKLLAAAPTTADRQAACNCLKTAAGNINNLNPGNAAALPGKCNVNIPYKISTTTNCNTIK 117          
BLAST of CB304613 vs. ExPASy Swiss-Prot
Match: NLTP4_ORYSJ (Non-specific lipid-transfer protein 4 OS=Oryza sativa subsp. japonica GN=Os12g0114500 PE=3 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 3.072e-28
Identity = 56/109 (51.38%), Postives = 75/109 (68.81%), Query Frame = -3
Query:  255 LVCALLLCILVTAPVANAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 581
            +   +++ +L+ AP A+A+TCGQV + LAPCI +       P   CC GVR+LN AA TT DRQ  C CLK+    + G++P++ AG+PS+CGV IPY ISPSTDCSRV
Sbjct:   10 VAAVMVVALLLAAPAASAVTCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCGVNIPYAISPSTDCSRV 118          
BLAST of CB304613 vs. ExPASy Swiss-Prot
Match: NLTP5_LENCU (Non-specific lipid-transfer protein 5 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.012e-28
Identity = 60/111 (54.05%), Postives = 77/111 (69.37%), Query Frame = -3
Query:  252 LVCALLLCILVTAPVAN-AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 581
            L C +L+  ++ AP+A  AI+CG VT  L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNC+K A  +I  +  N AA LP +CGV IPYKIS ST+C+ V+
Sbjct:    7 LACVVLVMCMIVAPMAEGAISCGAVTGDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCMKSAASSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 116          
BLAST of CB304613 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.240e-28
Identity = 60/109 (55.05%), Postives = 73/109 (66.97%), Query Frame = -3
Query:  255 LVCALLLCILVTAPVANAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 581
            +V A    +L       A+TCGQV++++ PC+ + R  G  P   CCSGVRSLN AARTT DR+AACNCLK A   IRG+    AA +PS+CGV IPY IS STDCSRV
Sbjct:   13 VVAAAAAVVLAATTSEAAVTCGQVSSAIGPCLSYARGQGSGPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGIRGLNVGKAASIPSKCGVSIPYTISTSTDCSRV 121          
BLAST of CB304613 vs. ExPASy Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 8.937e-28
Identity = 60/103 (58.25%), Postives = 71/103 (68.93%), Query Frame = -3
Query:  255 LCILVTAPVANAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 563
            L +L  A    AI+CGQV +++APCI + R  G  P   CCSGVRSLN AARTT DR+AACNCLK A   + G+    AA +PS+CGV IPY IS STDCSRV
Sbjct:   17 LVLLAAATSEAAISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 119          
BLAST of CB304613 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.167e-27
Identity = 54/92 (58.70%), Postives = 73/92 (79.35%), Query Frame = -3
Query:  252 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 527
            ITCGQV+++LAPCI +++ GG  PP  CC+G+R++N  ARTT DR+AACNCLK+  G+I G+ PN AA LP +CGV +PYKIS ST+C+ V+
Sbjct:    1 ITCGQVSSNLAPCINYVKGGGAVPPA-CCNGIRNVNNLARTTADRRAACNCLKQLSGSIPGVNPNNAAALPGKCGVNVPYKISASTNCATVK 91          
BLAST of CB304613 vs. ExPASy Swiss-Prot
Match: NLTP_BETVU (Non-specific lipid-transfer protein OS=Beta vulgaris GN=IWF1' PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.600e-27
Identity = 56/107 (52.34%), Postives = 75/107 (70.09%), Query Frame = -3
Query:  255 CALLLCILVTAPVANAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 575
            CAL++C++V AP+A AITCG V + LAPCI +L+ G   P   CC G++SLN AA +  DR+ AC CLK A  +I+GI    AA LP QCGV +PY ISP+T+C+ +
Sbjct:   11 CALVMCMMVAAPLAEAITCGLVASKLAPCIGYLQ-GAPGPSAACCGGIKSLNSAAASPADRKTACTCLKSAATSIKGINYGKAASLPRQCGVSVPYAISPNTNCNAI 116          
The following BLAST results are available for this feature:
BLAST of CB304613 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
NLTP2_LENCU8.084e-2956.25Non-specific lipid-transfer protein 2 OS=Lens culi... [more]
NLTP1_LENCU1.056e-2854.63Non-specific lipid-transfer protein 1 OS=Lens culi... [more]
NLTP_CICAR1.379e-2855.86Non-specific lipid-transfer protein OS=Cicer ariet... [more]
NLTP3_LENCU2.352e-2855.36Non-specific lipid-transfer protein 3 OS=Lens culi... [more]
NLTP4_ORYSJ3.072e-2851.38Non-specific lipid-transfer protein 4 OS=Oryza sat... [more]
NLTP5_LENCU4.012e-2854.05Non-specific lipid-transfer protein 5 OS=Lens culi... [more]
NLTP2_SORBI5.240e-2855.05Non-specific lipid-transfer protein 2 OS=Sorghum b... [more]
NLTP_MAIZE8.937e-2858.25Non-specific lipid-transfer protein OS=Zea mays PE... [more]
NLTP1_PRUDO1.167e-2758.70Non-specific lipid-transfer protein 1 OS=Prunus do... [more]
NLTP_BETVU2.600e-2752.34Non-specific lipid-transfer protein OS=Beta vulgar... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_D08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_D08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304613 ID=CB304613; Name=CB304613; organism=Citrus sinensis; type=EST; length=583bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGATAATACCACAAAATAA
CTATAATTAATCACTCAAAACACAGATCGCGTTTACATATTTAATATGAC
ATAAAAAGCAAATATACAAACATGACATGAGAGTGAAACTCATACAAGTG
GAGACTCGTTCGGACAAAGAAATTAACATAGATATTCTTTATTTATTTAT
TCTTCTCAGTCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTTC
ACCTGACCCTAGAGCAGTCGGTGCTGGGGCTGATCTTGTAAGGAATTCTG
ACTCCACATTGACTAGGAAGGCCAGCGGCAACATTAGGTTTGATGCCGCG
GATTGTTCCGTAAGCTCGTTTCAAGCAGTTGCATGCAGCTTGGCGGTCAG
GGGTGGTTCTGGCGGCGCCGTTGAGAGACCTGACGCCGCTACAGCATGGC
GGTGGAGGAAAACGCCCTCCAGTTCTCAAGAAAGGGATGCATGGAGCCAA
GGAGGCTGTCACCTGCCCGCATGTTATGGCATTAGCCACCGGGGCAGTCA
CCAGAATGCACAAAAGCAAAGCACAAACAAGCT
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