CB304613

Overview
NameCB304613
Unique NameCB304613
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length583
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304613_ssr188 microsatellite CB304613_ssr188:188..199. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13803 contig Csv1_Contig13803:82..664. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB304613 vs. ExPASy Swiss-Prot
Match: NLT11_PARJU (Probable non-specific lipid-transfer protein (Fragment) OS=Parietaria judaica GN=PMAI PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 5.820e-11
Identity = 32/93 (34.41%), Postives = 50/93 (53.76%), Query Frame = -3 
Query:  255 TCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISP---STDCSRV 524
            TCG +  +L PC+PF++   + P   CCSG + L+G  +T P R  AC C++ A  T   I   + + +P  CG+ +  K+ P   + DC  V
Sbjct:    3 TCGTMVRALMPCLPFVQGKEKEPSKGCCSGAKRLDGETKTGPQRVHACECIQTAMKTYSDIDGKLVSEVPKHCGI-VDSKLPPIDVNMDCKTV 94
The following BLAST results are available for this feature:
BLAST of CB304613 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
NLT11_PARJU5.820e-1134.41Probable non-specific lipid-transfer protein (Frag... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_D08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_D08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304613 ID=CB304613; Name=CB304613; organism=Citrus sinensis; type=EST; length=583bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGATAATACCACAAAATAA
CTATAATTAATCACTCAAAACACAGATCGCGTTTACATATTTAATATGAC
ATAAAAAGCAAATATACAAACATGACATGAGAGTGAAACTCATACAAGTG
GAGACTCGTTCGGACAAAGAAATTAACATAGATATTCTTTATTTATTTAT
TCTTCTCAGTCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTTC
ACCTGACCCTAGAGCAGTCGGTGCTGGGGCTGATCTTGTAAGGAATTCTG
ACTCCACATTGACTAGGAAGGCCAGCGGCAACATTAGGTTTGATGCCGCG
GATTGTTCCGTAAGCTCGTTTCAAGCAGTTGCATGCAGCTTGGCGGTCAG
GGGTGGTTCTGGCGGCGCCGTTGAGAGACCTGACGCCGCTACAGCATGGC
GGTGGAGGAAAACGCCCTCCAGTTCTCAAGAAAGGGATGCATGGAGCCAA
GGAGGCTGTCACCTGCCCGCATGTTATGGCATTAGCCACCGGGGCAGTCA
CCAGAATGCACAAAAGCAAAGCACAAACAAGCT
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