CB304617 | Citrus Genome Database

Overview


Name	CB304617
Unique Name	CB304617
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	627

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_STAAR (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain MRSA252) GN=clpP PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.187e-20
Identity = 49/114 (42.98%), Postives = 70/114 (61.40%), Query Frame = -1

Query:  286 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRP 627
            DT+Q +K  V T C+G A  +  FLLA G KG R A+P + + +  P G A+GQA +I   A+ +L+ R+ + + LS +TGQ  EKI KD  R     ++EA EYGLID ++ P
Sbjct:   79 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVP 192

[Close]

BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_STAAN (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain N315) GN=clpP PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.187e-20
Identity = 49/114 (42.98%), Postives = 70/114 (61.40%), Query Frame = -1

Query:  286 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRP 627
            DT+Q +K  V T C+G A  +  FLLA G KG R A+P + + +  P G A+GQA +I   A+ +L+ R+ + + LS +TGQ  EKI KD  R     ++EA EYGLID ++ P
Sbjct:   79 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVP 192

[Close]

BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_STAAM (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=clpP PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.187e-20
Identity = 49/114 (42.98%), Postives = 70/114 (61.40%), Query Frame = -1

Query:  286 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRP 627
            DT+Q +K  V T C+G A  +  FLLA G KG R A+P + + +  P G A+GQA +I   A+ +L+ R+ + + LS +TGQ  EKI KD  R     ++EA EYGLID ++ P
Sbjct:   79 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVP 192

[Close]

BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_STAAE (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain Newman) GN=clpP PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.187e-20
Identity = 49/114 (42.98%), Postives = 70/114 (61.40%), Query Frame = -1

Query:  286 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRP 627
            DT+Q +K  V T C+G A  +  FLLA G KG R A+P + + +  P G A+GQA +I   A+ +L+ R+ + + LS +TGQ  EKI KD  R     ++EA EYGLID ++ P
Sbjct:   79 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVP 192

[Close]

BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_STAAC (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain COL) GN=clpP PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.187e-20
Identity = 49/114 (42.98%), Postives = 70/114 (61.40%), Query Frame = -1

Query:  286 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRP 627
            DT+Q +K  V T C+G A  +  FLLA G KG R A+P + + +  P G A+GQA +I   A+ +L+ R+ + + LS +TGQ  EKI KD  R     ++EA EYGLID ++ P
Sbjct:   79 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVP 192

[Close]

BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_STAAB (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=clpP PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.187e-20
Identity = 49/114 (42.98%), Postives = 70/114 (61.40%), Query Frame = -1

Query:  286 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRP 627
            DT+Q +K  V T C+G A  +  FLLA G KG R A+P + + +  P G A+GQA +I   A+ +L+ R+ + + LS +TGQ  EKI KD  R     ++EA EYGLID ++ P
Sbjct:   79 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVP 192

[Close]

BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_STAA9 (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain JH9) GN=clpP PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.187e-20
Identity = 49/114 (42.98%), Postives = 70/114 (61.40%), Query Frame = -1

Query:  286 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRP 627
            DT+Q +K  V T C+G A  +  FLLA G KG R A+P + + +  P G A+GQA +I   A+ +L+ R+ + + LS +TGQ  EKI KD  R     ++EA EYGLID ++ P
Sbjct:   79 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVP 192

[Close]

BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_STAA8 (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain NCTC 8325) GN=clpP PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.187e-20
Identity = 49/114 (42.98%), Postives = 70/114 (61.40%), Query Frame = -1

Query:  286 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRP 627
            DT+Q +K  V T C+G A  +  FLLA G KG R A+P + + +  P G A+GQA +I   A+ +L+ R+ + + LS +TGQ  EKI KD  R     ++EA EYGLID ++ P
Sbjct:   79 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVP 192

[Close]

BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_STAA3 (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain USA300) GN=clpP PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.187e-20
Identity = 49/114 (42.98%), Postives = 70/114 (61.40%), Query Frame = -1

Query:  286 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRP 627
            DT+Q +K  V T C+G A  +  FLLA G KG R A+P + + +  P G A+GQA +I   A+ +L+ R+ + + LS +TGQ  EKI KD  R     ++EA EYGLID ++ P
Sbjct:   79 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVP 192

[Close]

BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_STAA2 (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain JH1) GN=clpP PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.187e-20
Identity = 49/114 (42.98%), Postives = 70/114 (61.40%), Query Frame = -1

Query:  286 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRP 627
            DT+Q +K  V T C+G A  +  FLLA G KG R A+P + + +  P G A+GQA +I   A+ +L+ R+ + + LS +TGQ  EKI KD  R     ++EA EYGLID ++ P
Sbjct:   79 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVP 192

The following BLAST results are available for this feature:

BLAST of CB304617 vs. ExPASy Swiss-Prot

BLAST of CB304617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
CLPP_STAAR	6.187e-20	42.98	ATP-dependent Clp protease proteolytic subunit OS=...	[more]
CLPP_STAAN	6.187e-20	42.98	ATP-dependent Clp protease proteolytic subunit OS=...	[more]
CLPP_STAAM	6.187e-20	42.98	ATP-dependent Clp protease proteolytic subunit OS=...	[more]
CLPP_STAAE	6.187e-20	42.98	ATP-dependent Clp protease proteolytic subunit OS=...	[more]
CLPP_STAAC	6.187e-20	42.98	ATP-dependent Clp protease proteolytic subunit OS=...	[more]
CLPP_STAAB	6.187e-20	42.98	ATP-dependent Clp protease proteolytic subunit OS=...	[more]
CLPP_STAA9	6.187e-20	42.98	ATP-dependent Clp protease proteolytic subunit OS=...	[more]
CLPP_STAA8	6.187e-20	42.98	ATP-dependent Clp protease proteolytic subunit OS=...	[more]
CLPP_STAA3	6.187e-20	42.98	ATP-dependent Clp protease proteolytic subunit OS=...	[more]
CLPP_STAA2	6.187e-20	42.98	ATP-dependent Clp protease proteolytic subunit OS=...	[more]

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Properties


Property Name	Value
Genbank description	FLAVEDO0001_IaR_E03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_E03 3, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB304617 ID=CB304617; Name=CB304617; organism=Citrus sinensis; type=EST; length=627bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAGAGAAAATGTAATGCCT
CTCAAAACAGGCAACCATCAAATTCTTTGTAGGTTTTATTAGATGTAAAT
TACACATTTCAGAGCAAACTTCTACAAGAATAATTCGATTGAGTAGTTAA
TTTTACAAGTAGATGAATGAAATTACGAAAGATAAAATATTTGATGACTT
CAGTCTACTCAGGGGAGAATCAATGAATACACTAACCAAGACCTGTTCCA
GCATCTTTACGAGGCATATCTTCCTTAATACGAGGTGGCCTGATTATACG
ATCTATCAGCCCATATTCAAGAGCCTCCTGGGAACCAAAGCGTTTAATCC
TACTTAAATCCTTCGTAATCTTCTCAAAGGGCTGACCTGTTTTCCTAGAC
AACTCCTTGAAAATGTAATCTCTGACTCTAAGAAGCTCATCTGCTTCATT
ACGAATGTCATCAGCCTGACCGCGAGCTGCACCAGCTGGAGAGTCTAAAG
CAATTCTCGAAAGAGGCATTGCAGACCGATTACCCTTTTCTCCACCTGCT
AGAAGAAACCCTGCTAAATGATAGGCAAAGCCCACACAGTGAGTGCCAAC
AGGACTCTTCAAGCTCTGCATAGTGTC