CB304617

Overview
NameCB304617
Unique NameCB304617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_RUBXD (ATP-dependent Clp protease proteolytic subunit OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=clpP PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.080e-20
Identity = 53/114 (46.49%), Postives = 71/114 (62.28%), Query Frame = -1
Query:  289 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA-GAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIR 627
            DTMQ +K  + T  +G A  +  FLLA G KG R A+P +RI L  PA G   GQA D+   A EL+R +  + + LS  TGQP++KI +D  R    G++EA+EYGLID I+R
Sbjct:   85 DTMQFVKPDIVTTALGMAASMGAFLLAAGTKGKRFALPNTRILLHQPAVGGLAGQASDVEIHARELIRTKRRLNEILSEHTGQPYDKIERDTDRDFIMGAEEAIEYGLIDDIVR 198          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_NITSB (ATP-dependent Clp protease proteolytic subunit OS=Nitratiruptor sp. (strain SB155-2) GN=clpP PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.080e-20
Identity = 50/112 (44.64%), Postives = 70/112 (62.50%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTM  +K  V T C+G A  +  FLL+ G KG R A+P +RI +  P G A+GQA DI  +A E+LR++  + + L+  TGQ  +KI KD  R     S+EA EYGLID+++
Sbjct:   80 DTMNYIKPDVSTICIGQAASMGAFLLSSGTKGKRYALPHARIMIHQPLGGAQGQATDIEIQAKEILRLKKILNEILAENTGQSVKKIAKDTERDFFMSSEEAKEYGLIDQVL 191          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_HAEDU (ATP-dependent Clp protease proteolytic subunit OS=Haemophilus ducreyi GN=clpP PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.080e-20
Identity = 45/112 (40.18%), Postives = 71/112 (63.39%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTM  +K  V T C G A  +  FLL+GG+KG R A+P +R+ +  P G ARGQA DI+ +A E+L++++ + ++++  +GQ F K+  D  R     + EA  YGLID+++
Sbjct:   79 DTMNFIKPDVATLCTGQACSMGAFLLSGGKKGKRFALPNARVMIHQPLGGARGQATDIQIQAQEILKLKEMLTRKMAEHSGQTFAKVAADTERDNFMSATEAKNYGLIDKVL 190          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP4_PROM9 (ATP-dependent Clp protease proteolytic subunit 4 OS=Prochlorococcus marinus (strain MIT 9312) GN=clpP4 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.080e-20
Identity = 51/113 (45.13%), Postives = 69/113 (61.06%), Query Frame = -1
Query:  289 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIR 627
            DTMQ +   V T C G A  +  FLL+GG KG R A+P SRI +  P G A+GQA +I  +A E+L ++  +   L+  TGQP EKI +D  R       EA+EYGLID++I+
Sbjct:  106 DTMQQISPDVVTICFGVAASMGAFLLSGGAKGKRLALPNSRIMIHQPLGGAQGQAVEIEIQAKEILFLKKTLNSLLAEHTGQPLEKINEDTERDYFLSPSEAVEYGLIDKVIK 218          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNJB (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. GN=clpP2 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.080e-20
Identity = 49/112 (43.75%), Postives = 70/112 (62.50%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ ++  V T C+G A  +  FLLAGG KG R A+P +RI +  P G A+G A DI  +A E+L +++ +   L+  TGQP E+I +D  R      ++A EYGLID++I
Sbjct:   77 DTMQHIQPDVSTICIGLAASMGAFLLAGGTKGKRIALPHARIMIHQPLGGAQGPATDIEIQAKEILFIKNSLNSLLAYHTGQPLERIERDTDRDNFMTPEQAKEYGLIDQVI 188          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNJA (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain JA-3-3Ab) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.080e-20
Identity = 49/112 (43.75%), Postives = 70/112 (62.50%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ ++  V T C+G A  +  FLLAGG KG R A+P +RI +  P G A+G A DI  +A E+L +++ +   L+  TGQP E+I +D  R      ++A EYGLID++I
Sbjct:   77 DTMQHIQPDVSTICIGLAASMGAFLLAGGAKGKRIALPHARIMIHQPLGGAQGPATDIEIQAKEILFIKNSLNSLLAYHTGQPLERIERDTDRDNFMTPEQAKEYGLIDQVI 188          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP1_GLUOX (ATP-dependent Clp protease proteolytic subunit 1 OS=Gluconobacter oxydans GN=clpP1 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.080e-20
Identity = 48/112 (42.86%), Postives = 71/112 (63.39%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ ++ PV T C+G A  +   LLAGGEKG+R A+P +R+ +  P+G A+GQA DI  +A E+L +R  + +     TGQ  E+I + L R     + EA E+GLID+++
Sbjct:   92 DTMQYIRCPVSTVCIGQAASMGSLLLAGGEKGHRYALPNARVMVHQPSGGAQGQASDIEIQAREILIIRQRLNEIYREHTGQTLEQIEQKLERDSYLSANEAREFGLIDKVV 203          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_SHESM (ATP-dependent Clp protease proteolytic subunit OS=Shewanella sp. (strain MR-4) GN=clpP PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.055e-19
Identity = 49/112 (43.75%), Postives = 67/112 (59.82%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +  FLLAGGEKG R  +P SR+ +  P G  +GQA DI   A E+L ++  +   LS  TGQP E I +D  R     + +A+EYGL+D ++
Sbjct:   87 DTMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKRFCLPNSRVMIHQPLGGFQGQASDIAIHAQEILGIKHKLNLMLSEHTGQPLELIERDTDRDNFMSATQAVEYGLVDAVM 198          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_SHESA (ATP-dependent Clp protease proteolytic subunit OS=Shewanella sp. (strain ANA-3) GN=clpP PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.055e-19
Identity = 49/112 (43.75%), Postives = 67/112 (59.82%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +  FLLAGGEKG R  +P SR+ +  P G  +GQA DI   A E+L ++  +   LS  TGQP E I +D  R     + +A+EYGL+D ++
Sbjct:   87 DTMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKRFCLPNSRVMIHQPLGGFQGQASDIAIHAQEILGIKHKLNLMLSEHTGQPLEVIERDTDRDNFMSATQAVEYGLVDAVM 198          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_SHEON (ATP-dependent Clp protease proteolytic subunit OS=Shewanella oneidensis GN=clpP PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.055e-19
Identity = 48/112 (42.86%), Postives = 69/112 (61.61%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +  FLLAGGEKG R  +P SR+ +  P G  +GQA DI   A E+L +++ + + L+  TGQP E I +D  R     + +A+EYGL+D ++
Sbjct:   87 DTMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKRFCLPNSRVMIHQPLGGFQGQASDIAIHAQEILGIKNKLNQMLADHTGQPLEVIERDTDRDNFMSATQAVEYGLVDAVM 198          
The following BLAST results are available for this feature:
BLAST of CB304617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_RUBXD8.080e-2046.49ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_NITSB8.080e-2044.64ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_HAEDU8.080e-2040.18ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP4_PROM98.080e-2045.13ATP-dependent Clp protease proteolytic subunit 4 O... [more]
CLPP2_SYNJB8.080e-2043.75ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_SYNJA8.080e-2043.75ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_GLUOX8.080e-2042.86ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_SHESM1.055e-1943.75ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SHESA1.055e-1943.75ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SHEON1.055e-1942.86ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_E03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_E03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304617 ID=CB304617; Name=CB304617; organism=Citrus sinensis; type=EST; length=627bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAGAGAAAATGTAATGCCT
CTCAAAACAGGCAACCATCAAATTCTTTGTAGGTTTTATTAGATGTAAAT
TACACATTTCAGAGCAAACTTCTACAAGAATAATTCGATTGAGTAGTTAA
TTTTACAAGTAGATGAATGAAATTACGAAAGATAAAATATTTGATGACTT
CAGTCTACTCAGGGGAGAATCAATGAATACACTAACCAAGACCTGTTCCA
GCATCTTTACGAGGCATATCTTCCTTAATACGAGGTGGCCTGATTATACG
ATCTATCAGCCCATATTCAAGAGCCTCCTGGGAACCAAAGCGTTTAATCC
TACTTAAATCCTTCGTAATCTTCTCAAAGGGCTGACCTGTTTTCCTAGAC
AACTCCTTGAAAATGTAATCTCTGACTCTAAGAAGCTCATCTGCTTCATT
ACGAATGTCATCAGCCTGACCGCGAGCTGCACCAGCTGGAGAGTCTAAAG
CAATTCTCGAAAGAGGCATTGCAGACCGATTACCCTTTTCTCCACCTGCT
AGAAGAAACCCTGCTAAATGATAGGCAAAGCCCACACAGTGAGTGCCAAC
AGGACTCTTCAAGCTCTGCATAGTGTC
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