CB304617

Overview
NameCB304617
Unique NameCB304617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_GEOTN (ATP-dependent Clp protease proteolytic subunit OS=Geobacillus thermodenitrificans (strain NG80-2) GN=clpP PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.055e-19
Identity = 49/112 (43.75%), Postives = 68/112 (60.71%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +  FLLA G KG R A+P S + +  P G A+GQA +I   A  +L +RD + + L+  TGQP E I +D  R     +Q+A EYG+IDR++
Sbjct:   79 DTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEVMIHQPLGGAQGQATEIEIAAKRILFLRDKLNRILAENTGQPIEVIERDTDRDNFMTAQKAQEYGIIDRVL 190          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_GEOSW (ATP-dependent Clp protease proteolytic subunit OS=Geobacillus sp. (strain WCH70) GN=clpP PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.055e-19
Identity = 50/112 (44.64%), Postives = 68/112 (60.71%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +  FLLA G KG R A+P S I +  P G A+GQA +I   A  +L +RD + + L+  TGQP E I +D  R     +Q+A EYG+IDR++
Sbjct:   79 DTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGAQGQATEIEIAAKRILFLRDKLNRILAENTGQPVEVIERDTDRDNFMTAQKAQEYGIIDRVL 190          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_BURVG (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=clpP PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.055e-19
Identity = 49/112 (43.75%), Postives = 69/112 (61.61%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +  FLLA G KG R A+P SR+ +  P G ARGQA DI  +A E+L +++ +   L++ TGQ  E+I +D  R     S +A  YGLID+++
Sbjct:  102 DTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMIHQPLGGARGQASDIEIQAREILYLKERLNNLLAQHTGQDVERIARDTDRDNFMSSDDAKAYGLIDQVL 213          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_BURPS (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia pseudomallei GN=clpP PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.055e-19
Identity = 50/111 (45.05%), Postives = 67/111 (60.36%), Query Frame = -1
Query:  295 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 627
            DTMQ +K  V T C+G A  +  FLLA G KG R A+P +R+ +  P G ARGQA DI  +A E+L +RD +   L+  TGQ  E+I +D  R     S++A  YGLID +
Sbjct:  102 DTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMIHQPLGGARGQASDIEIQAREILYLRDRLNHLLAHHTGQDVERIARDTDRDNFMSSEDAKAYGLIDHV 212          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_BURP6 (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia pseudomallei (strain 668) GN=clpP PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.055e-19
Identity = 50/111 (45.05%), Postives = 67/111 (60.36%), Query Frame = -1
Query:  295 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 627
            DTMQ +K  V T C+G A  +  FLLA G KG R A+P +R+ +  P G ARGQA DI  +A E+L +RD +   L+  TGQ  E+I +D  R     S++A  YGLID +
Sbjct:  102 DTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMIHQPLGGARGQASDIEIQAREILYLRDRLNHLLAHHTGQDVERIARDTDRDNFMSSEDAKAYGLIDHV 212          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_BURP1 (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia pseudomallei (strain 1710b) GN=clpP PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.055e-19
Identity = 50/111 (45.05%), Postives = 67/111 (60.36%), Query Frame = -1
Query:  295 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 627
            DTMQ +K  V T C+G A  +  FLLA G KG R A+P +R+ +  P G ARGQA DI  +A E+L +RD +   L+  TGQ  E+I +D  R     S++A  YGLID +
Sbjct:   92 DTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMIHQPLGGARGQASDIEIQAREILYLRDRLNHLLAHHTGQDVERIARDTDRDNFMSSEDAKAYGLIDHV 202          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_BURP0 (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia pseudomallei (strain 1106a) GN=clpP PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.055e-19
Identity = 50/111 (45.05%), Postives = 67/111 (60.36%), Query Frame = -1
Query:  295 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 627
            DTMQ +K  V T C+G A  +  FLLA G KG R A+P +R+ +  P G ARGQA DI  +A E+L +RD +   L+  TGQ  E+I +D  R     S++A  YGLID +
Sbjct:  102 DTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMIHQPLGGARGQASDIEIQAREILYLRDRLNHLLAHHTGQDVERIARDTDRDNFMSSEDAKAYGLIDHV 212          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_BURMS (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia mallei (strain SAVP1) GN=clpP PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.055e-19
Identity = 50/111 (45.05%), Postives = 67/111 (60.36%), Query Frame = -1
Query:  295 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 627
            DTMQ +K  V T C+G A  +  FLLA G KG R A+P +R+ +  P G ARGQA DI  +A E+L +RD +   L+  TGQ  E+I +D  R     S++A  YGLID +
Sbjct:  102 DTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMIHQPLGGARGQASDIEIQAREILYLRDRLNHLLAHHTGQDVERIARDTDRDNFMSSEDAKAYGLIDHV 212          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_BURMA (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia mallei GN=clpP PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.055e-19
Identity = 50/111 (45.05%), Postives = 67/111 (60.36%), Query Frame = -1
Query:  295 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 627
            DTMQ +K  V T C+G A  +  FLLA G KG R A+P +R+ +  P G ARGQA DI  +A E+L +RD +   L+  TGQ  E+I +D  R     S++A  YGLID +
Sbjct:   92 DTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMIHQPLGGARGQASDIEIQAREILYLRDRLNHLLAHHTGQDVERIARDTDRDNFMSSEDAKAYGLIDHV 202          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_BURM9 (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia mallei (strain NCTC 10229) GN=clpP PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.055e-19
Identity = 50/111 (45.05%), Postives = 67/111 (60.36%), Query Frame = -1
Query:  295 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 627
            DTMQ +K  V T C+G A  +  FLLA G KG R A+P +R+ +  P G ARGQA DI  +A E+L +RD +   L+  TGQ  E+I +D  R     S++A  YGLID +
Sbjct:  102 DTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMIHQPLGGARGQASDIEIQAREILYLRDRLNHLLAHHTGQDVERIARDTDRDNFMSSEDAKAYGLIDHV 212          
The following BLAST results are available for this feature:
BLAST of CB304617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_GEOTN1.055e-1943.75ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GEOSW1.055e-1944.64ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURVG1.055e-1943.75ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURPS1.055e-1945.05ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURP61.055e-1945.05ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURP11.055e-1945.05ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURP01.055e-1945.05ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURMS1.055e-1945.05ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURMA1.055e-1945.05ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURM91.055e-1945.05ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_E03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_E03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304617 ID=CB304617; Name=CB304617; organism=Citrus sinensis; type=EST; length=627bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAGAGAAAATGTAATGCCT
CTCAAAACAGGCAACCATCAAATTCTTTGTAGGTTTTATTAGATGTAAAT
TACACATTTCAGAGCAAACTTCTACAAGAATAATTCGATTGAGTAGTTAA
TTTTACAAGTAGATGAATGAAATTACGAAAGATAAAATATTTGATGACTT
CAGTCTACTCAGGGGAGAATCAATGAATACACTAACCAAGACCTGTTCCA
GCATCTTTACGAGGCATATCTTCCTTAATACGAGGTGGCCTGATTATACG
ATCTATCAGCCCATATTCAAGAGCCTCCTGGGAACCAAAGCGTTTAATCC
TACTTAAATCCTTCGTAATCTTCTCAAAGGGCTGACCTGTTTTCCTAGAC
AACTCCTTGAAAATGTAATCTCTGACTCTAAGAAGCTCATCTGCTTCATT
ACGAATGTCATCAGCCTGACCGCGAGCTGCACCAGCTGGAGAGTCTAAAG
CAATTCTCGAAAGAGGCATTGCAGACCGATTACCCTTTTCTCCACCTGCT
AGAAGAAACCCTGCTAAATGATAGGCAAAGCCCACACAGTGAGTGCCAAC
AGGACTCTTCAAGCTCTGCATAGTGTC
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