CB304617

Overview
NameCB304617
Unique NameCB304617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP2_BACAN (ATP-dependent Clp protease proteolytic subunit 2 OS=Bacillus anthracis GN=clpP2 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.070e-19
Identity = 49/111 (44.14%), Postives = 69/111 (62.16%), Query Frame = -1
Query:  295 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 627
            DTMQ +K  V T C+G A  +  FLLA GEKG R A+P S   +  P G A+GQA +I   A  +L +R+ + + L+ +TGQP E + +D  R     +++ALEYGLID+I
Sbjct:   79 DTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEAMIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQPLEVLQRDTDRDNFMTAEKALEYGLIDKI 189          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_VIBSL (ATP-dependent Clp protease proteolytic subunit OS=Vibrio splendidus (strain LGP32) GN=clpP PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.010e-19
Identity = 46/112 (41.07%), Postives = 67/112 (59.82%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +  FLLAGG  G R  +P SR+ +  P G  +GQA DI+  A E+L ++  + K L+  TGQP E + +D  R     + +A+EYGL+D ++
Sbjct:   92 DTMQFIKPNVSTVCMGQACSMGAFLLAGGTPGKRHVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKQKLNKLLAEHTGQPLEVVERDTDRDNFMSADQAVEYGLVDSVL 203          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_VIBCM (ATP-dependent Clp protease proteolytic subunit OS=Vibrio cholerae serotype O1 (strain M66-2) GN=clpP PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.010e-19
Identity = 46/113 (40.71%), Postives = 69/113 (61.06%), Query Frame = -1
Query:  289 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIR 627
            DTMQ +K  V T C+G A  +  FLLAGG  G R  +P SR+ +  P G  +GQA DI+  A E+L +++ + + L+  TGQP E I +D  R     + +A+EYGL+D +++
Sbjct:   84 DTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKNKLNRLLAEHTGQPIEVIERDTDRDNFMSADQAVEYGLVDAVLK 196          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_VIBCH (ATP-dependent Clp protease proteolytic subunit OS=Vibrio cholerae GN=clpP PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.010e-19
Identity = 46/113 (40.71%), Postives = 69/113 (61.06%), Query Frame = -1
Query:  289 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIR 627
            DTMQ +K  V T C+G A  +  FLLAGG  G R  +P SR+ +  P G  +GQA DI+  A E+L +++ + + L+  TGQP E I +D  R     + +A+EYGL+D +++
Sbjct:   84 DTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKNKLNRLLAEHTGQPIEVIERDTDRDNFMSADQAVEYGLVDAVLK 196          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_VIBC3 (ATP-dependent Clp protease proteolytic subunit OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=clpP PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.010e-19
Identity = 46/113 (40.71%), Postives = 69/113 (61.06%), Query Frame = -1
Query:  289 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIR 627
            DTMQ +K  V T C+G A  +  FLLAGG  G R  +P SR+ +  P G  +GQA DI+  A E+L +++ + + L+  TGQP E I +D  R     + +A+EYGL+D +++
Sbjct:   84 DTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKNKLNRLLAEHTGQPIEVIERDTDRDNFMSADQAVEYGLVDAVLK 196          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_STACT (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus carnosus (strain TM300) GN=clpP PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.010e-19
Identity = 48/116 (41.38%), Postives = 69/116 (59.48%), Query Frame = -1
Query:  280 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPR 627
            DT+Q +K  V T C+G A  +  FLLA G KG R A+P + + +  P G A+GQA +I   A  +L+ R  + K L+ +TGQ  E+I KD  R     + EA EYGLID +++P +
Sbjct:   79 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAATHILKTRAKLNKILAERTGQSIEQIEKDTDRDNFLTADEAKEYGLIDEVMQPEK 194          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_SHEPA (ATP-dependent Clp protease proteolytic subunit OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=clpP PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.010e-19
Identity = 48/112 (42.86%), Postives = 66/112 (58.93%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +  FLLAGG +G R  +P SR+ +  P G  +GQA DI   A E+L +++ +   L+  TGQP E I +D  R     + EA EYGL+D +I
Sbjct:   88 DTMQFIKPNVSTVCIGQAASMGAFLLAGGAEGKRHCLPNSRVMIHQPLGGFQGQASDIAIHAQEILGIKNKLNTMLAEHTGQPLEVIERDTDRDNFMSATEAAEYGLVDSVI 199          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_SHEHH (ATP-dependent Clp protease proteolytic subunit OS=Shewanella halifaxensis (strain HAW-EB4) GN=clpP PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.010e-19
Identity = 48/112 (42.86%), Postives = 66/112 (58.93%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +  FLLAGG +G R  +P SR+ +  P G  +GQA DI   A E+L +++ +   L+  TGQP E I +D  R     + EA EYGL+D +I
Sbjct:   88 DTMQFIKPNVSTVCIGQAASMGAFLLAGGAEGKRHCLPNSRVMIHQPLGGFQGQASDIAIHAQEILGIKNKLNTMLAEHTGQPLEVIERDTDRDNFMSATEAAEYGLVDSVI 199          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_SHEDO (ATP-dependent Clp protease proteolytic subunit OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=clpP PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.010e-19
Identity = 46/112 (41.07%), Postives = 68/112 (60.71%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +  FLLAGG KG R  +P SR+ +  P G  +GQA DI   A E+L +++ + + L+  TGQP E I +D  R     + +A++YGL+D ++
Sbjct:   88 DTMQFIKPNVSTVCIGQAASMGAFLLAGGAKGKRHCLPNSRVMIHQPLGGFQGQASDIAIHAQEILGIKNKLNQMLAEHTGQPLEVIERDTDRDNFMSATQAMDYGLVDSLL 199          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_HAEIG (ATP-dependent Clp protease proteolytic subunit OS=Haemophilus influenzae (strain PittGG) GN=clpP PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.010e-19
Identity = 46/112 (41.07%), Postives = 68/112 (60.71%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  + T C+G A  +  FLLAGG  G R+A+P +R+ +  P G  RGQA DI+  A E+L+++  +   L+  TGQ  E+I KD  R     ++EA  YGL+D ++
Sbjct:   79 DTMQFIKPDIRTLCIGQACSMGAFLLAGGTAGKRAALPNARVMIHQPLGGFRGQASDIQIHAQEILKIKHTLNDRLAFHTGQSIERIEKDTDRDNFMSAEEAQAYGLVDEVL 190          
The following BLAST results are available for this feature:
BLAST of CB304617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP2_BACAN3.070e-1944.14ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_VIBSL4.010e-1941.07ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_VIBCM4.010e-1940.71ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_VIBCH4.010e-1940.71ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_VIBC34.010e-1940.71ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STACT4.010e-1941.38ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SHEPA4.010e-1942.86ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SHEHH4.010e-1942.86ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SHEDO4.010e-1941.07ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_HAEIG4.010e-1941.07ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_E03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_E03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304617 ID=CB304617; Name=CB304617; organism=Citrus sinensis; type=EST; length=627bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAGAGAAAATGTAATGCCT
CTCAAAACAGGCAACCATCAAATTCTTTGTAGGTTTTATTAGATGTAAAT
TACACATTTCAGAGCAAACTTCTACAAGAATAATTCGATTGAGTAGTTAA
TTTTACAAGTAGATGAATGAAATTACGAAAGATAAAATATTTGATGACTT
CAGTCTACTCAGGGGAGAATCAATGAATACACTAACCAAGACCTGTTCCA
GCATCTTTACGAGGCATATCTTCCTTAATACGAGGTGGCCTGATTATACG
ATCTATCAGCCCATATTCAAGAGCCTCCTGGGAACCAAAGCGTTTAATCC
TACTTAAATCCTTCGTAATCTTCTCAAAGGGCTGACCTGTTTTCCTAGAC
AACTCCTTGAAAATGTAATCTCTGACTCTAAGAAGCTCATCTGCTTCATT
ACGAATGTCATCAGCCTGACCGCGAGCTGCACCAGCTGGAGAGTCTAAAG
CAATTCTCGAAAGAGGCATTGCAGACCGATTACCCTTTTCTCCACCTGCT
AGAAGAAACCCTGCTAAATGATAGGCAAAGCCCACACAGTGAGTGCCAAC
AGGACTCTTCAAGCTCTGCATAGTGTC
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