CB304617

Overview
NameCB304617
Unique NameCB304617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6243 contig Csv1_Contig6243:486..1085. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_CLOK5 (ATP-dependent Clp protease proteolytic subunit OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=clpP PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.280e-21
Identity = 52/111 (46.85%), Postives = 68/111 (61.26%), Query Frame = -1
Query:  295 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 627
            DTMQ +KS V T C+G A  +  FLLA GEKG R A+P S I +  P G  +GQA DI   AD +LR++  +   +S +TGQ  EK+ KD  R     ++EA EYGLID +
Sbjct:   79 DTMQYIKSDVSTICIGMAASMGAFLLAAGEKGKRFALPNSEIMIHQPLGGFQGQATDIGIHADRILRIKKKLNAIISERTGQSIEKVEKDTERDNFMTAEEAKEYGLIDEV 189          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_CLOK1 (ATP-dependent Clp protease proteolytic subunit OS=Clostridium kluyveri (strain NBRC 12016) GN=clpP PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.280e-21
Identity = 52/111 (46.85%), Postives = 68/111 (61.26%), Query Frame = -1
Query:  295 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 627
            DTMQ +KS V T C+G A  +  FLLA GEKG R A+P S I +  P G  +GQA DI   AD +LR++  +   +S +TGQ  EK+ KD  R     ++EA EYGLID +
Sbjct:   79 DTMQYIKSDVSTICIGMAASMGAFLLAAGEKGKRFALPNSEIMIHQPLGGFQGQATDIGIHADRILRIKKKLNAIISERTGQSIEKVEKDTERDNFMTAEEAKEYGLIDEV 189          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_ALKMQ (ATP-dependent Clp protease proteolytic subunit OS=Alkaliphilus metalliredigens (strain QYMF) GN=clpP PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.280e-21
Identity = 50/112 (44.64%), Postives = 70/112 (62.50%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTM  +K  V T CVG A  +  FLLA G KG R A+P + + +  P G  RGQA+DIR  A+ ++++RD + K L  +TGQP E++ KD  R     ++EA EYG+ID +I
Sbjct:   79 DTMNYIKPDVSTICVGMAASMGAFLLAAGAKGKRFALPNAEVMIHQPLGGTRGQAEDIRIHAERIVKLRDTLNKILVERTGQPLERVQKDTDRDFFMEAKEAKEYGIIDEVI 190          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP3_SYNPX (ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus sp. (strain WH8102) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.280e-21
Identity = 56/116 (48.28%), Postives = 74/116 (63.79%), Query Frame = -1
Query:  283 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP-AGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPP 627
            DT+Q +KS V T CVG A  +  FLLA G KG R A+P SRI +  P  G +R QA DI  EA E+LR+++ + + LS  +GQ F+KI KD  R     ++EA +YGLIDR+I  P
Sbjct:   82 DTIQYVKSEVVTICVGLAASMGAFLLAAGTKGKRVALPHSRIMIHQPLGGTSRRQASDIEIEAREILRMKEMLNRSLSDMSGQSFDKIEKDTDRDYFLSAEEAKDYGLIDRVISHP 197          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNSC (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain CC9605) GN=clpP2 PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.280e-21
Identity = 53/112 (47.32%), Postives = 71/112 (63.39%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T CVG A  +  FLL  G KG RS++  SRI +  P G A+GQA DIR +ADE+L +++ + KELS +TGQ  ++I +D  R       EA+ YGLID +I
Sbjct:   77 DTMQHIKPDVHTVCVGLAASMGAFLLCAGTKGKRSSLQHSRIMIHQPLGGAQGQASDIRIQADEILFLKERLNKELSDRTGQTLDRIQQDTDRDFFMSPTEAMNYGLIDSVI 188          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_THELT (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=clpP PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.284e-21
Identity = 55/116 (47.41%), Postives = 70/116 (60.34%), Query Frame = -1
Query:  280 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPR 627
            DTMQ +KS V T CVG A  +A  LLA G KG R A+P +RI L  P G A G   D+     ELLR+++ I   LS KTGQP ++I KD  R     + EAL+YGL+D++I   R
Sbjct:   83 DTMQYIKSDVVTICVGQAASMAAVLLASGTKGKRFALPNARIMLHQPLGGAEGPVKDVEIITKELLRIKNLINTILSEKTGQPLDRIEKDTDRDFFMSAYEALDYGLVDKVIESKR 198          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP1_GLOVI (ATP-dependent Clp protease proteolytic subunit 1 OS=Gloeobacter violaceus GN=clpP1 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.284e-21
Identity = 49/113 (43.36%), Postives = 74/113 (65.49%), Query Frame = -1
Query:  289 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIR 627
            DTMQ +++ V T CVG A  +  FLL  G KG R+++P SRI +  P G A+GQA DI  +A E+L  +D + + LS +TGQP E+I +D  R     +++A +YGLID++++
Sbjct:   81 DTMQHVRADVATMCVGLAASMGSFLLTAGAKGKRTSLPHSRIMIHQPLGGAQGQATDIGIQAKEILYTKDRLNQILSERTGQPLERIERDTDRDFFMSAEDAKQYGLIDQVVQ 193          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_SYNWW (ATP-dependent Clp protease proteolytic subunit OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=clpP PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.596e-21
Identity = 50/116 (43.10%), Postives = 72/116 (62.07%), Query Frame = -1
Query:  280 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPR 627
            DT+Q ++  V T CVG A  +  FLLA G+KG R A+P + I +  PAG  +GQA DI   A  ++ +++ + K L+ +TGQP E+I KD  R     +QEA EYG+ID +I  P+
Sbjct:   80 DTLQYIRPDVSTICVGLAASMGAFLLAAGKKGKRYALPNAEIMIHQPAGGTQGQATDIEIHARRIMNMKESLNKILAERTGQPLERIQKDTDRDYFMTAQEAKEYGIIDEVISHPK 195          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_PSYCK (ATP-dependent Clp protease proteolytic subunit OS=Psychrobacter cryohalolentis (strain K5) GN=clpP PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 5.596e-21
Identity = 51/112 (45.54%), Postives = 72/112 (64.29%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTM  +K  V T C+G AY +  FLLA GEKG R A+  +R+ +  P+G A+GQA DI   A E+L+ R  + + L+ +TGQP +KI KD+ R     ++EA EYGLID ++
Sbjct:   97 DTMNFIKPEVSTICMGGAYSMGSFLLAAGEKGKRYALANARVMIHQPSGGAQGQATDIEINAREILKTRARLNEILAERTGQPVDKIEKDVERDYWLDAKEAKEYGLIDEVL 208          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_BACP2 (ATP-dependent Clp protease proteolytic subunit OS=Bacillus pumilus (strain SAFR-032) GN=clpP PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.308e-21
Identity = 50/112 (44.64%), Postives = 71/112 (63.39%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +  FLLA GEKG R A+P S + +  P G A+GQA +I   A  +L +RD + + L+ +TGQP E I +D  R     ++EAL+YGLID+++
Sbjct:   79 DTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNQVLAERTGQPIEVIERDTDRDNFKTAEEALQYGLIDKVL 190          
The following BLAST results are available for this feature:
BLAST of CB304617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_CLOK53.280e-2146.85ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLOK13.280e-2146.85ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ALKMQ3.280e-2144.64ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP3_SYNPX3.280e-2148.28ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP2_SYNSC3.280e-2147.32ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_THELT4.284e-2147.41ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP1_GLOVI4.284e-2143.36ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_SYNWW5.596e-2143.10ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PSYCK5.596e-2145.54ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BACP27.308e-2144.64ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_E03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_E03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304617 ID=CB304617; Name=CB304617; organism=Citrus sinensis; type=EST; length=627bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAGAGAAAATGTAATGCCT
CTCAAAACAGGCAACCATCAAATTCTTTGTAGGTTTTATTAGATGTAAAT
TACACATTTCAGAGCAAACTTCTACAAGAATAATTCGATTGAGTAGTTAA
TTTTACAAGTAGATGAATGAAATTACGAAAGATAAAATATTTGATGACTT
CAGTCTACTCAGGGGAGAATCAATGAATACACTAACCAAGACCTGTTCCA
GCATCTTTACGAGGCATATCTTCCTTAATACGAGGTGGCCTGATTATACG
ATCTATCAGCCCATATTCAAGAGCCTCCTGGGAACCAAAGCGTTTAATCC
TACTTAAATCCTTCGTAATCTTCTCAAAGGGCTGACCTGTTTTCCTAGAC
AACTCCTTGAAAATGTAATCTCTGACTCTAAGAAGCTCATCTGCTTCATT
ACGAATGTCATCAGCCTGACCGCGAGCTGCACCAGCTGGAGAGTCTAAAG
CAATTCTCGAAAGAGGCATTGCAGACCGATTACCCTTTTCTCCACCTGCT
AGAAGAAACCCTGCTAAATGATAGGCAAAGCCCACACAGTGAGTGCCAAC
AGGACTCTTCAAGCTCTGCATAGTGTC
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