CB304617

Overview
NameCB304617
Unique NameCB304617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_BRUAB (ATP-dependent Clp protease proteolytic subunit OS=Brucella abortus GN=clpP PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.092e-16
Identity = 42/120 (35.00%), Postives = 71/120 (59.17%), Query Frame = -1
Query:  268 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIKED 627
            DTMQ ++ PV T C+G A  +   LL  G  G+R A+P +RI +  P+G  +GQA DI   A ++++++  + +   + TG+ ++ I + L R     +QEALE+GLID+++    +  D
Sbjct:   87 DTMQFIRPPVSTLCMGQAASMGSLLLTAGATGHRYALPNARIMVHQPSGGFQGQASDIERHAQDIIKMKRRLNEIYVKHTGRDYDTIERTLDRDHFMTAQEALEFGLIDKVVEARDVSAD 206          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_BRUA2 (ATP-dependent Clp protease proteolytic subunit OS=Brucella abortus (strain 2308) GN=clpP PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.092e-16
Identity = 42/120 (35.00%), Postives = 71/120 (59.17%), Query Frame = -1
Query:  268 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIKED 627
            DTMQ ++ PV T C+G A  +   LL  G  G+R A+P +RI +  P+G  +GQA DI   A ++++++  + +   + TG+ ++ I + L R     +QEALE+GLID+++    +  D
Sbjct:   87 DTMQFIRPPVSTLCMGQAASMGSLLLTAGATGHRYALPNARIMVHQPSGGFQGQASDIERHAQDIIKMKRRLNEIYVKHTGRDYDTIERTLDRDHFMTAQEALEFGLIDKVVEARDVSAD 206          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_BRUA1 (ATP-dependent Clp protease proteolytic subunit OS=Brucella abortus (strain S19) GN=clpP PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.092e-16
Identity = 42/120 (35.00%), Postives = 71/120 (59.17%), Query Frame = -1
Query:  268 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIKED 627
            DTMQ ++ PV T C+G A  +   LL  G  G+R A+P +RI +  P+G  +GQA DI   A ++++++  + +   + TG+ ++ I + L R     +QEALE+GLID+++    +  D
Sbjct:   87 DTMQFIRPPVSTLCMGQAASMGSLLLTAGATGHRYALPNARIMVHQPSGGFQGQASDIERHAQDIIKMKRRLNEIYVKHTGRDYDTIERTLDRDHFMTAQEALEFGLIDKVVEARDVSAD 206          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_BLOPB (ATP-dependent Clp protease proteolytic subunit OS=Blochmannia pennsylvanicus (strain BPEN) GN=clpP PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.092e-16
Identity = 43/112 (38.39%), Postives = 69/112 (61.61%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DT+Q ++  V T C+G A  ++ FLLA G KG R  +P +RI +  P G+ +GQA DI     E+L++++ I K +++ TGQ  + I KD  R     + EA++YGL+D ++
Sbjct:   93 DTIQFVRPDVSTFCMGQAASMSAFLLASGTKGKRFCLPNARIMIHQPLGSFQGQATDIAIHTREILKIKNNINKLMAKHTGQSIDIINKDTERDCFLSADEAMKYGLVDCVL 204          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP2_TROW8 (ATP-dependent Clp protease proteolytic subunit 2 OS=Tropheryma whipplei (strain TW08/27) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.092e-16
Identity = 44/114 (38.60%), Postives = 74/114 (64.91%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP--AGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ ++  + T C+G A   A  +L+ G  G R A+P +RI +  P  A +  GQA DI  +A E++R+R+++ K L++ + +  ++++KD+ R K   S++ALEYGLID+I+
Sbjct:   84 DTMQYIRPQIQTVCLGQAASAAAVILSAGTPGKRLALPNARILIHQPVVASSGYGQASDIEIQAREIMRMREWLEKTLAQHSNKSVKQVSKDIDRDKILSSEQALEYGLIDQIL 197          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP1_TROWT (ATP-dependent Clp protease proteolytic subunit 1 OS=Tropheryma whipplei (strain Twist) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.092e-16
Identity = 44/114 (38.60%), Postives = 74/114 (64.91%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP--AGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ ++  + T C+G A   A  +L+ G  G R A+P +RI +  P  A +  GQA DI  +A E++R+R+++ K L++ + +  ++++KD+ R K   S++ALEYGLID+I+
Sbjct:   84 DTMQYIRPQIQTVCLGQAASAAAVILSAGTPGKRLALPNARILIHQPVVASSGYGQASDIEIQAREIMRMREWLEKTLAQHSNKSVKQVSKDIDRDKILSSEQALEYGLIDQIL 197          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP1_BURXL (ATP-dependent Clp protease proteolytic subunit 1 OS=Burkholderia xenovorans (strain LB400) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.092e-16
Identity = 41/112 (36.61%), Postives = 67/112 (59.82%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C GFA  +  FLL  G++G R A+P +RI +  P+G ++G A D+  +A E+L +R+ +   ++ +TG+  E+I +D  R     +  A  YGL+D ++
Sbjct:   89 DTMQFIKPEVSTLCTGFAASMGTFLLTAGQRGKRYALPNARIMIHQPSGGSQGTAADVEIQAKEVLYLRERLNAMMAERTGRSIEEIARDTDRDNFMSAHAAKTYGLVDEVL 200          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_THIDA (ATP-dependent Clp protease proteolytic subunit OS=Thiobacillus denitrificans (strain ATCC 25259) GN=clpP PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.426e-16
Identity = 42/112 (37.50%), Postives = 66/112 (58.93%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +  FLL  G KG R  +P SR+ +  P G  +GQA DI   A E+L ++  +   L++ TGQ  E I +D  R     ++++++YGL+D+++
Sbjct:   93 DTMQFIKPDVSTLCIGQAASMGAFLLTAGAKGKRYCLPNSRVMIHQPLGGFQGQASDIEIHAKEILYLKARLNGMLAKHTGQSLEVIDRDTDRDNFMSAEDSVKYGLVDKVL 204          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_SPHAL (ATP-dependent Clp protease proteolytic subunit OS=Sphingopyxis alaskensis GN=clpP PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.426e-16
Identity = 48/125 (38.40%), Postives = 71/125 (56.80%), Query Frame = -1
Query:  259 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII--RPPRIKEDMPR 627
            DTMQ ++  VGT C+G A  +  FLLA GE G R A+  +R+ +  P+G ARG A DI  +A E+LR+R  +     + TG+  + I K + R     + EA E+G++D +   RP    +D PR
Sbjct:   84 DTMQYIRPRVGTVCIGQAASMGSFLLAAGEPGMRVALTNARVMVHQPSGGARGMASDIEIQAKEILRIRKRMNDLYVKYTGKSLKDIEKAMDRDTFLEADEAKEFGIVDHVYDRRPALPGDDAPR 208          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_PSEE4 (ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas entomophila (strain L48) GN=clpP PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.426e-16
Identity = 45/111 (40.54%), Postives = 61/111 (54.95%), Query Frame = -1
Query:  295 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 627
            DTMQ +K  V T C+G A  +  FLLA G  G R  +P SR+ +  P G  +GQA DI   A E+L ++  + + L+  TGQ  E I +D  R     +  A EYGLID +
Sbjct:   95 DTMQFIKPDVSTICIGQACSMGAFLLAAGAAGKRHCLPNSRVMIHQPLGGFQGQATDIEIHAQEILNIKARLNELLAHHTGQSLETIKRDTERDNFMSAARAAEYGLIDSV 205          
The following BLAST results are available for this feature:
BLAST of CB304617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_BRUAB1.092e-1635.00ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BRUA21.092e-1635.00ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BRUA11.092e-1635.00ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BLOPB1.092e-1638.39ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_TROW81.092e-1638.60ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_TROWT1.092e-1638.60ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP1_BURXL1.092e-1636.61ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_THIDA1.426e-1637.50ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SPHAL1.426e-1638.40ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PSEE41.426e-1640.54ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_E03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_E03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304617 ID=CB304617; Name=CB304617; organism=Citrus sinensis; type=EST; length=627bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAGAGAAAATGTAATGCCT
CTCAAAACAGGCAACCATCAAATTCTTTGTAGGTTTTATTAGATGTAAAT
TACACATTTCAGAGCAAACTTCTACAAGAATAATTCGATTGAGTAGTTAA
TTTTACAAGTAGATGAATGAAATTACGAAAGATAAAATATTTGATGACTT
CAGTCTACTCAGGGGAGAATCAATGAATACACTAACCAAGACCTGTTCCA
GCATCTTTACGAGGCATATCTTCCTTAATACGAGGTGGCCTGATTATACG
ATCTATCAGCCCATATTCAAGAGCCTCCTGGGAACCAAAGCGTTTAATCC
TACTTAAATCCTTCGTAATCTTCTCAAAGGGCTGACCTGTTTTCCTAGAC
AACTCCTTGAAAATGTAATCTCTGACTCTAAGAAGCTCATCTGCTTCATT
ACGAATGTCATCAGCCTGACCGCGAGCTGCACCAGCTGGAGAGTCTAAAG
CAATTCTCGAAAGAGGCATTGCAGACCGATTACCCTTTTCTCCACCTGCT
AGAAGAAACCCTGCTAAATGATAGGCAAAGCCCACACAGTGAGTGCCAAC
AGGACTCTTCAAGCTCTGCATAGTGTC
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