CB304617

Overview
NameCB304617
Unique NameCB304617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP1_RHIL3 (ATP-dependent Clp protease proteolytic subunit 1 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.863e-16
Identity = 41/112 (36.61%), Postives = 70/112 (62.50%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTM+ +++PV T C+G A  +  FLL  GE G R+A+P + I +  P+G  +GQA D+   A+E+L+ +  + +  +   G+ +E   + + R +   ++EALE+GLIDRI+
Sbjct:   83 DTMRFIRAPVHTLCMGTARSMGSFLLMAGEAGGRAALPNASILIHQPSGGFQGQASDMMIHAEEILKTKQRMTRLYAEHCGRSYEDFERGMDRDRFMTAEEALEWGLIDRIL 194          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_PSEPF (ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas fluorescens (strain Pf0-1) GN=clpP PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.433e-16
Identity = 43/112 (38.39%), Postives = 65/112 (58.04%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +  FLL  G  G R  +P SR+ +  P G  +GQA DI   A E+L +R+ +   +++ +G+  E+I +D +R     ++ A EYGLID +I
Sbjct:   95 DTMQFIKPNVSTTCIGQACSMGAFLLTAGAPGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAKEILFIRERLNTLMAKHSGRTLEEIERDTNRDNFMSAEAAKEYGLIDEVI 206          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_PSEF5 (ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=clpP PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.433e-16
Identity = 43/112 (38.39%), Postives = 65/112 (58.04%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +  FLL  G  G R  +P SR+ +  P G  +GQA DI   A E+L +R+ +   +++ +G+  E+I +D +R     ++ A EYGLID +I
Sbjct:   95 DTMQFIKPNVSTTCIGQACSMGAFLLTAGAPGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAKEILFIRERLNTLMAKHSGRTLEEIERDTNRDNFMSAEAAREYGLIDEVI 206          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_ELUMP (ATP-dependent Clp protease proteolytic subunit OS=Elusimicrobium minutum (strain Pei191) GN=clpP PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.433e-16
Identity = 47/115 (40.87%), Postives = 66/115 (57.39%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP---AGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K+P+ T C+G A      LLA G KG R A+P +RI +  P    G   GQ  DI  E++EL + ++++   L+  TGQ  EKI +D  R     +QEA  YGLID ++
Sbjct:   77 DTMQFIKAPITTICMGQAMSFGAVLLAAGSKGKRYALPHARIMIHQPLIWGGGISGQVTDIEIESNELRKNKEHLLDILAHHTGQDKEKIRQDSERNYYMSAQEAKAYGLIDEVL 191          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_BAUCH (ATP-dependent Clp protease proteolytic subunit OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=clpP PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.433e-16
Identity = 42/112 (37.50%), Postives = 69/112 (61.61%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +  FLLA G KG R  +P +R+ +  P G  +GQA DI+  A E+L+V++ + + +++  G+  + I +D  R +   + EA++YGL+D I+
Sbjct:   90 DTMQFIKPNVSTFCMGQAASMGAFLLAAGTKGKRFCLPNARMMIHQPMGGFQGQATDIQIHAKEILKVKNRMNELMAKHIGKTLQVIEQDTERDRFLSANEAVDYGLVDAIL 201          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP1_RHIEC (ATP-dependent Clp protease proteolytic subunit 1 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.433e-16
Identity = 42/120 (35.00%), Postives = 75/120 (62.50%), Query Frame = -1
Query:  268 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIKED 627
            DTM+ +++PV T C+G A  +  FLL  GE G R+A+P + I +  P+G  +GQA D+   A+E+L+ +  + +  +   G+ +E   + + R +   ++EALE+GLI+RI+   +++ED
Sbjct:   82 DTMRFIRAPVHTLCMGTARSMGSFLLMAGEPGERAALPNASILIHQPSGGFQGQASDMLIHAEEILKTKQRMTRLYAEHCGRSYEDFERGMDRDRFMTAEEALEWGLIERIL---KVRED 198          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_RICPU (ATP-dependent Clp protease proteolytic subunit OS=Rickettsia peacockii (strain Rustic) GN=clpP PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.177e-16
Identity = 44/112 (39.29%), Postives = 65/112 (58.04%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +   LL GGEKG R ++P SRI +  P+G  +GQA DI   A E L+++  + +  S+ T Q  + I K + R      +EA ++GL+D I+
Sbjct:   79 DTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLPHSRIMIHQPSGGYKGQATDIEIHAQETLKIKRLLNELYSKHTEQELKHIEKSMERDNFMSPEEAKKFGLVDNIM 190          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_RICCN (ATP-dependent Clp protease proteolytic subunit OS=Rickettsia conorii GN=clpP PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.177e-16
Identity = 44/112 (39.29%), Postives = 65/112 (58.04%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +   LL GGEKG R ++P SRI +  P+G  +GQA DI   A E L+++  + +  S+ T Q  + I K + R      +EA ++GL+D I+
Sbjct:   79 DTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLPHSRIMIHQPSGGYKGQATDIEIHAQETLKIKRLLNELYSKHTEQELKHIEKSMERDNFMSPEEAKKFGLVDNIM 190          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_RICAH (ATP-dependent Clp protease proteolytic subunit OS=Rickettsia akari (strain Hartford) GN=clpP PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.177e-16
Identity = 44/112 (39.29%), Postives = 65/112 (58.04%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +   LL GG +G R ++P SRI +  P+G  +GQA DI   A E L+++  + +  S+ TGQ  + I K + R      +EA ++G+ID II
Sbjct:   79 DTMQYIKPKVATLCIGQACSMGSLLLCGGTQGMRYSLPHSRIMIHQPSGGYKGQATDIEIHAQETLKIKRLLNELYSKHTGQELKHIEKSMERDNFMSPEEAKKFGIIDNII 190          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_LISMO (ATP-dependent Clp protease proteolytic subunit OS=Listeria monocytogenes GN=clpP PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.177e-16
Identity = 45/112 (40.18%), Postives = 66/112 (58.93%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTM  +K+ V T  +G A  +  FLL  G  G R A+P + I +  P G A+GQA +I   A  +L++++ +   ++ KTGQP+E I +D  R     +QEA +YGLID II
Sbjct:   79 DTMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEIMIHQPLGGAQGQATEIEIAARHILKIKERMNTIMAEKTGQPYEVIARDTDRDNFMTAQEAKDYGLIDDII 190          
The following BLAST results are available for this feature:
BLAST of CB304617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP1_RHIL31.863e-1636.61ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_PSEPF2.433e-1638.39ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PSEF52.433e-1638.39ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ELUMP2.433e-1640.87ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BAUCH2.433e-1637.50ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP1_RHIEC2.433e-1635.00ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_RICPU3.177e-1639.29ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_RICCN3.177e-1639.29ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_RICAH3.177e-1639.29ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LISMO3.177e-1640.18ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_E03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_E03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304617 ID=CB304617; Name=CB304617; organism=Citrus sinensis; type=EST; length=627bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAGAGAAAATGTAATGCCT
CTCAAAACAGGCAACCATCAAATTCTTTGTAGGTTTTATTAGATGTAAAT
TACACATTTCAGAGCAAACTTCTACAAGAATAATTCGATTGAGTAGTTAA
TTTTACAAGTAGATGAATGAAATTACGAAAGATAAAATATTTGATGACTT
CAGTCTACTCAGGGGAGAATCAATGAATACACTAACCAAGACCTGTTCCA
GCATCTTTACGAGGCATATCTTCCTTAATACGAGGTGGCCTGATTATACG
ATCTATCAGCCCATATTCAAGAGCCTCCTGGGAACCAAAGCGTTTAATCC
TACTTAAATCCTTCGTAATCTTCTCAAAGGGCTGACCTGTTTTCCTAGAC
AACTCCTTGAAAATGTAATCTCTGACTCTAAGAAGCTCATCTGCTTCATT
ACGAATGTCATCAGCCTGACCGCGAGCTGCACCAGCTGGAGAGTCTAAAG
CAATTCTCGAAAGAGGCATTGCAGACCGATTACCCTTTTCTCCACCTGCT
AGAAGAAACCCTGCTAAATGATAGGCAAAGCCCACACAGTGAGTGCCAAC
AGGACTCTTCAAGCTCTGCATAGTGTC
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