CB304617

Overview
NameCB304617
Unique NameCB304617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_LISMF (ATP-dependent Clp protease proteolytic subunit OS=Listeria monocytogenes serotype 4b (strain F2365) GN=clpP PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.177e-16
Identity = 45/112 (40.18%), Postives = 66/112 (58.93%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTM  +K+ V T  +G A  +  FLL  G  G R A+P + I +  P G A+GQA +I   A  +L++++ +   ++ KTGQP+E I +D  R     +QEA +YGLID II
Sbjct:   79 DTMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEIMIHQPLGGAQGQATEIEIAARHILKIKERMNTIMAEKTGQPYEVIARDTDRDNFMTAQEAKDYGLIDDII 190          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_LISIN (ATP-dependent Clp protease proteolytic subunit OS=Listeria innocua GN=clpP PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.177e-16
Identity = 45/112 (40.18%), Postives = 66/112 (58.93%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTM  +K+ V T  +G A  +  FLL  G  G R A+P + I +  P G A+GQA +I   A  +L++++ +   ++ KTGQP+E I +D  R     +QEA +YGLID II
Sbjct:   79 DTMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEIMIHQPLGGAQGQATEIEIAARHILKIKERMNTIMAEKTGQPYEVIARDTDRDNFMTAQEAKDYGLIDDII 190          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_LARHH (ATP-dependent Clp protease proteolytic subunit OS=Laribacter hongkongensis (strain HLHK9) GN=clpP PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.177e-16
Identity = 42/112 (37.50%), Postives = 65/112 (58.04%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTM  +K  V T C+G A  +  FLL+ G KG R A+P SR+ +  P G  +GQA D    A E+L ++  + + ++   G+P E + +D  R     + +ALEYGLID+++
Sbjct:   95 DTMNFIKPSVSTLCIGQAASMGAFLLSAGAKGKRFALPNSRVMIHQPLGGFQGQASDFEIHAREILTLKRKLNELMAAHCGRPLEDLERDTDRDNFMNAAQALEYGLIDQVL 206          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_LACPL (ATP-dependent Clp protease proteolytic subunit OS=Lactobacillus plantarum GN=clpP PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.177e-16
Identity = 47/118 (39.83%), Postives = 68/118 (57.63%), Query Frame = -1
Query:  274 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIK 627
            DTM  +KS V T  +G A  +A  L + G KG R A+P S I +  P+G A+GQ  +I   A+E+L+ R  I + L+  +GQ  EK+  D  R     +QEA +YGLID I+   ++K
Sbjct:   79 DTMNFIKSDVQTIVMGMAASMASVLASSGTKGKRFALPNSEILIHQPSGGAQGQQTEIEIVAEEILKTRKKINQILADNSGQSVEKLNHDTERDNYLSAQEAKDYGLIDDIMENNKLK 196          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_DESPS (ATP-dependent Clp protease proteolytic subunit OS=Desulfotalea psychrophila GN=clpP PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.177e-16
Identity = 46/112 (41.07%), Postives = 62/112 (55.36%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  + T C+G A  +   LLA G  G R A+P SRI +  P G  +GQA DI     E+LR+R  +   L+  TG+  +KI  D  R     S EA +YGLID ++
Sbjct:   79 DTMQYIKCDIATLCMGQAASMGAVLLAAGTAGKRYALPNSRIMIHQPLGGFQGQATDIEIHTKEILRIRKDLNNILAHHTGKTLKKIESDTERDNFMSSVEAQKYGLIDEVL 190          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_CARRP (ATP-dependent Clp protease proteolytic subunit OS=Carsonella ruddii (strain PV) GN=clpP PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.177e-16
Identity = 44/112 (39.29%), Postives = 64/112 (57.14%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DT+Q LKS V T C+G A  +A  LLA G+KG R   P SRI +  P G A+GQA D+   A E++ ++  + + LS  T     +I KD  R      ++ L+YG+ID ++
Sbjct:   78 DTIQFLKSDVSTICIGQAASMAAVLLAAGKKGKRFCFPNSRIMIHQPLGYAQGQASDVEIHAREMINIKQILCEILSSHTNNSIFQIFKDTDRDNFMNCKQTLKYGIIDNVL 189          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_ACIAD (ATP-dependent Clp protease proteolytic subunit OS=Acinetobacter sp. (strain ADP1) GN=clpP PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.177e-16
Identity = 41/112 (36.61%), Postives = 66/112 (58.93%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T+C+G A  +  FLL  G KG R  +  +R+ +  P G  RGQA DI   A E+L +++ + + ++  +GQ +E++ +D  R     +Q A EYGL+D ++
Sbjct:   86 DTMQFIKPDVVTYCMGQAASMGAFLLNAGAKGKRYCLENARVMIHQPLGGFRGQASDIEIHAREILFIKERLNRLMAEHSGQDYERVARDTDRDNFMTAQAAKEYGLVDEVL 197          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP4_RHOSR (ATP-dependent Clp protease proteolytic subunit 4 OS=Rhodococcus sp. (strain RHA1) GN=clpP4 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.177e-16
Identity = 44/112 (39.29%), Postives = 65/112 (58.04%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ L+  + T+C+G A   A  LLA G KG+R  +  SR  L  P+    G   D+  +A E++RVR      LS+ TGQ  E++ +D  R + F ++EA+EYGL D ++
Sbjct:   81 DTMQFLRPTIATYCMGQAASAAAVLLAAGTKGHRHVLAHSRTLLHQPSTQGNGTISDLALQAAEIMRVRSQTEAILSKHTGQTVERLRRDTDRDRIFTAEEAIEYGLADTLV 192          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP2_STRCO (ATP-dependent Clp protease proteolytic subunit 2 OS=Streptomyces coelicolor GN=clpP2 PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.177e-16
Identity = 47/113 (41.59%), Postives = 69/113 (61.06%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP-AGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A   A  LLA G  G R A+P +R+ +  P +   RGQ  D+   A+E+LR+R  + + L++ +  P EKI +D+ R K   +++AL YGLID+II
Sbjct:   95 DTMQYVKPDVQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPYSETGRGQVSDLEIAANEILRMRSQLEEMLAKHSTTPVEKIREDIERDKILTAEDALSYGLIDQII 207          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPR_SYNY3 (Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechocystis sp. (strain PCC 6803) GN=clpR PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.150e-16
Identity = 45/115 (39.13%), Postives = 67/115 (58.26%), Query Frame = -1
Query:  283 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPP 627
            DT+  +K PV T C+G A   A  +L+ G KG R+++P + I L+     A+GQA DI+  A E++  +  + + LS  TGQ  EK+ KD+ R       +A EYGLIDR++  P
Sbjct:  101 DTLNYIKPPVHTICIGQAMGTAAMILSSGTKGYRASLPHATIVLNQNRTGAQGQATDIQIRAKEVISNKQTMLEILSLNTGQTQEKLAKDMDRTFYLTPAQAKEYGLIDRVLESP 215          
The following BLAST results are available for this feature:
BLAST of CB304617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_LISMF3.177e-1640.18ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LISIN3.177e-1640.18ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LARHH3.177e-1637.50ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LACPL3.177e-1639.83ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DESPS3.177e-1641.07ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CARRP3.177e-1639.29ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ACIAD3.177e-1636.61ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP4_RHOSR3.177e-1639.29ATP-dependent Clp protease proteolytic subunit 4 O... [more]
CLPP2_STRCO3.177e-1641.59ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPR_SYNY34.150e-1639.13Putative ATP-dependent Clp protease proteolytic su... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_E03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_E03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304617 ID=CB304617; Name=CB304617; organism=Citrus sinensis; type=EST; length=627bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAGAGAAAATGTAATGCCT
CTCAAAACAGGCAACCATCAAATTCTTTGTAGGTTTTATTAGATGTAAAT
TACACATTTCAGAGCAAACTTCTACAAGAATAATTCGATTGAGTAGTTAA
TTTTACAAGTAGATGAATGAAATTACGAAAGATAAAATATTTGATGACTT
CAGTCTACTCAGGGGAGAATCAATGAATACACTAACCAAGACCTGTTCCA
GCATCTTTACGAGGCATATCTTCCTTAATACGAGGTGGCCTGATTATACG
ATCTATCAGCCCATATTCAAGAGCCTCCTGGGAACCAAAGCGTTTAATCC
TACTTAAATCCTTCGTAATCTTCTCAAAGGGCTGACCTGTTTTCCTAGAC
AACTCCTTGAAAATGTAATCTCTGACTCTAAGAAGCTCATCTGCTTCATT
ACGAATGTCATCAGCCTGACCGCGAGCTGCACCAGCTGGAGAGTCTAAAG
CAATTCTCGAAAGAGGCATTGCAGACCGATTACCCTTTTCTCCACCTGCT
AGAAGAAACCCTGCTAAATGATAGGCAAAGCCCACACAGTGAGTGCCAAC
AGGACTCTTCAAGCTCTGCATAGTGTC
back to top