CB304617

Overview
NameCB304617
Unique NameCB304617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_DESDA (ATP-dependent Clp protease proteolytic subunit OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=clpP PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.420e-16
Identity = 42/112 (37.50%), Postives = 69/112 (61.61%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DT++ + +PV T C+G A  +  FLLA G+ G R A+P S+I +  P+   +GQA DI   A E+LR+++ + + L+  TG+P++ I K   R      +EA + G+IDR++
Sbjct:   79 DTLRFISAPVSTVCMGRAASMGAFLLAAGKPGLRYALPNSQIMIHQPSAGYQGQATDIEIHAKEVLRLKERLNRILAENTGRPYKDIVKATERDNFLTPEEAKDLGIIDRVL 190          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_DESAA (ATP-dependent Clp protease proteolytic subunit OS=Desulfatibacillum alkenivorans (strain AK-01) GN=clpP PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.420e-16
Identity = 43/112 (38.39%), Postives = 66/112 (58.93%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTM  +K  + T C+G A  +   LLA G  G R ++P +RI +  P G  +GQA DI  +A E+LR+++ + + L+  TG+P +++ +D  R       EA EYGLID +I
Sbjct:   79 DTMAYIKPEITTVCIGQAASMGAVLLAAGNHGKRYSLPNARILIHQPMGGFQGQASDIAIQAQEILRMKEALNEILASHTGKPLKQVQQDTDRDYFMSPLEAKEYGLIDHVI 190          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_CAEEL (ATP-dependent Clp protease proteolytic subunit, mitochondrial OS=Caenorhabditis elegans GN=clpp-1 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 5.420e-16
Identity = 43/111 (38.74%), Postives = 67/111 (60.36%), Query Frame = -1
Query:  295 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 627
            DT+Q + +PV T  +G A  +   LL  GEKG RSA+P SRI +  P+G A+G   DI   A+E+ R++  + +     TG  +++I K L R +   + EAL++GL+D+I
Sbjct:  101 DTIQMISAPVSTWVIGQASSMGSLLLCAGEKGMRSALPNSRIMVHQPSGGAQGTCSDIVIRAEEITRLKRRLNEIYVHHTGMSYDEIEKTLDRDRFMSAHEALKFGLVDQI 211          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_BACTN (ATP-dependent Clp protease proteolytic subunit OS=Bacteroides thetaiotaomicron GN=clpP PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.420e-16
Identity = 43/112 (38.39%), Postives = 65/112 (58.04%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ + S V T C G A  +A  LL  G +G RSA+P SR+ +  P G A+GQA DI   A E+ +++  ++  ++  +   F+K+  D  R     +QEA EYG+ID ++
Sbjct:  106 DTMQFISSDVATICTGMAASMAAVLLVAGAEGKRSALPHSRVMIHQPMGGAQGQASDIEITAREIQKLKKELYTIIADHSHTDFDKVWADSDRDYWMTAQEAKEYGMIDEVL 217          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPPL_CYAPA (Putative ATP-dependent Clp protease proteolytic subunit-like OS=Cyanophora paradoxa GN=clpP-B PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.420e-16
Identity = 45/114 (39.47%), Postives = 65/114 (57.02%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA--GAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DT+  +K+ + T C+G A  ++  +LA G KG R A+P SRI +  P   G   GQA D+  EA EL+  ++ +      +TGQP   I KDL R + F +Q A EYG ID ++
Sbjct:   81 DTILQIKADIVTICLGLAGGMSSLILAAGTKGQRFALPNSRIMMQEPLIDGGVNGQATDLAIEAKELMDTKEILINLYHERTGQPKPVIEKDLQRPRYFSAQAAKEYGFIDSLL 194          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP4_STRAW (ATP-dependent Clp protease proteolytic subunit 4 OS=Streptomyces avermitilis GN=clpP4 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.420e-16
Identity = 46/113 (40.71%), Postives = 68/113 (60.18%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP-AGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  + T C+G A   A  LLA G  G R A+P +R+ +  P +   RGQ  D+   A+E+LR+R  +   L++ +  P EKI +D+ R K   +++AL YGLID+II
Sbjct:  103 DTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSDLEIAANEILRMRSQLEDMLAKHSTTPIEKIREDIERDKILTAEDALAYGLIDQII 215          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP3_FRASC (ATP-dependent Clp protease proteolytic subunit 3 OS=Frankia sp. (strain CcI3) GN=clpP3 PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 5.420e-16
Identity = 48/112 (42.86%), Postives = 64/112 (57.14%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ ++  + T C+G A   A  LLA G  G R A+  SRI +  P+    GQ+ DI  +A E+LRVR      L+R TG+   +I +D  R K F + EA EYGLID +I
Sbjct:   88 DTMQFVRPDISTICMGQAASAAAVLLAAGTPGKRFALENSRILIHQPSAQGEGQSSDIEIQAREILRVRALQETMLARHTGRTETEIRRDTERDKIFSADEAEEYGLIDEVI 199          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP2_CORDI (ATP-dependent Clp protease proteolytic subunit 2 OS=Corynebacterium diphtheriae GN=clpP2 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.420e-16
Identity = 42/112 (37.50%), Postives = 68/112 (60.71%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTM+     + T+ +G A  +  FLL+GG KG R A+P +RI +  P+    G A DI  +A++  + +  + + ++  TGQ FE+ITKD  R + F +Q+A EYG++D +I
Sbjct:   79 DTMKYSPCDIATYGMGLAASMGQFLLSGGTKGKRFALPHARIMMHQPSAGVGGTAADIAIQAEQFAQTKREMAELIAEHTGQSFEQITKDSDRDRWFTAQQAKEYGIVDHVI 190          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_NEIMA (ATP-dependent Clp protease proteolytic subunit OS=Neisseria meningitidis serogroup A GN=clpP PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.078e-16
Identity = 44/114 (38.60%), Postives = 68/114 (59.65%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP--AGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTM  +K  V T C+G A  +  FLL+ GEKG R A+P SRI +  P  +G   GQA DI   A ELL++++ + + +++  G+    + +D  R     ++EA EYGLID+++
Sbjct:   83 DTMNFIKPDVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMIHQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCGRDLADLERDTDRDNFMSAEEAKEYGLIDQVL 196          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_NEIG1 (ATP-dependent Clp protease proteolytic subunit OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=clpP PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.078e-16
Identity = 44/114 (38.60%), Postives = 68/114 (59.65%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP--AGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTM  +K  V T C+G A  +  FLL+ GEKG R A+P SRI +  P  +G   GQA DI   A ELL++++ + + +++  G+    + +D  R     ++EA EYGLID+++
Sbjct:   83 DTMNFIKPDVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMIHQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCGRDLADLERDTDRDNFMSAEEAKEYGLIDQVL 196          
The following BLAST results are available for this feature:
BLAST of CB304617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_DESDA5.420e-1637.50ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DESAA5.420e-1638.39ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CAEEL5.420e-1638.74ATP-dependent Clp protease proteolytic subunit, mi... [more]
CLPP_BACTN5.420e-1638.39ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPPL_CYAPA5.420e-1639.47Putative ATP-dependent Clp protease proteolytic su... [more]
CLPP4_STRAW5.420e-1640.71ATP-dependent Clp protease proteolytic subunit 4 O... [more]
CLPP3_FRASC5.420e-1642.86ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP2_CORDI5.420e-1637.50ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_NEIMA7.078e-1638.60ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_NEIG17.078e-1638.60ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_E03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_E03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304617 ID=CB304617; Name=CB304617; organism=Citrus sinensis; type=EST; length=627bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAGAGAAAATGTAATGCCT
CTCAAAACAGGCAACCATCAAATTCTTTGTAGGTTTTATTAGATGTAAAT
TACACATTTCAGAGCAAACTTCTACAAGAATAATTCGATTGAGTAGTTAA
TTTTACAAGTAGATGAATGAAATTACGAAAGATAAAATATTTGATGACTT
CAGTCTACTCAGGGGAGAATCAATGAATACACTAACCAAGACCTGTTCCA
GCATCTTTACGAGGCATATCTTCCTTAATACGAGGTGGCCTGATTATACG
ATCTATCAGCCCATATTCAAGAGCCTCCTGGGAACCAAAGCGTTTAATCC
TACTTAAATCCTTCGTAATCTTCTCAAAGGGCTGACCTGTTTTCCTAGAC
AACTCCTTGAAAATGTAATCTCTGACTCTAAGAAGCTCATCTGCTTCATT
ACGAATGTCATCAGCCTGACCGCGAGCTGCACCAGCTGGAGAGTCTAAAG
CAATTCTCGAAAGAGGCATTGCAGACCGATTACCCTTTTCTCCACCTGCT
AGAAGAAACCCTGCTAAATGATAGGCAAAGCCCACACAGTGAGTGCCAAC
AGGACTCTTCAAGCTCTGCATAGTGTC
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