CB304617

Overview
NameCB304617
Unique NameCB304617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_XANCB (ATP-dependent Clp protease proteolytic subunit OS=Xanthomonas campestris pv. campestris (strain B100) GN=clpP PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.245e-16
Identity = 45/112 (40.18%), Postives = 64/112 (57.14%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T CVG A  +   LLA G  G R A+P SR+ +  P G  +GQA DI   A E+L +R  + + L++ TGQ  E I +D  R     + +A  YGL+D+++
Sbjct:   86 DTMQYIKPDVSTICVGQAASMGALLLASGAAGKRYALPNSRVMIHQPLGGFQGQATDIDIHAREILTLRSRLNEILAKHTGQSLETIARDTERDNFKSAVDAQAYGLVDQVL 197          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_XANC5 (ATP-dependent Clp protease proteolytic subunit OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=clpP PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.245e-16
Identity = 45/112 (40.18%), Postives = 64/112 (57.14%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T CVG A  +   LLA G  G R A+P SR+ +  P G  +GQA DI   A E+L +R  + + L++ TGQ  E I +D  R     + +A  YGL+D+++
Sbjct:   86 DTMQYIKPDVSTICVGQAASMGALLLASGAAGKRYALPNSRVMIHQPLGGFQGQATDIDIHAREILTLRSRLNEILAKHTGQSLETIARDTERDNFKSAVDAQAYGLVDQVL 197          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_XANAC (ATP-dependent Clp protease proteolytic subunit OS=Xanthomonas axonopodis pv. citri GN=clpP PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.245e-16
Identity = 45/112 (40.18%), Postives = 64/112 (57.14%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T CVG A  +   LLA G  G R A+P SR+ +  P G  +GQA DI   A E+L +R  + + L++ TGQ  E I +D  R     + +A  YGL+D+++
Sbjct:   86 DTMQYIKPDVSTICVGQAASMGALLLASGAAGKRYALPNSRVMIHQPLGGFQGQATDIDIHAREILTLRSRLNEILAKHTGQSLETIARDTERDNFKSAVDAQAYGLVDQVL 197          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_WOLPP (ATP-dependent Clp protease proteolytic subunit OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) GN=clpP PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.245e-16
Identity = 44/112 (39.29%), Postives = 65/112 (58.04%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +   V T C+G A  +   LL  G +G R ++P SRI +  P+G   GQA DI   A+E+LRV+  + +   + TG   +KI + + R K    +EA++ GLIDR+I
Sbjct:   79 DTMQYINPDVSTLCIGQAASMGSLLLTAGAEGKRYSLPHSRIMIHQPSGGYHGQATDIEIHANEILRVKKKLNQIYEKHTGNSLKKIEEMMERDKFMDPEEAMKTGLIDRVI 190          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_VESOH (ATP-dependent Clp protease proteolytic subunit OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=clpP PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.245e-16
Identity = 44/112 (39.29%), Postives = 61/112 (54.46%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +KS + T C+G A  +   LL  G KG R A+P  R  +  P G   GQA D+   A E+L+VR  + +     TGQ  + I KD  R     + EA +YGLID+++
Sbjct:   84 DTMQFIKSDISTLCIGQAASMGALLLTAGTKGKRFALPNVRCMIHQPLGGFSGQASDVDIHAQEILKVRANLNQIFKLHTGQVIKTIQKDTDRDNFMSADEATKYGLIDKVL 195          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_LACSS (ATP-dependent Clp protease proteolytic subunit OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=clpP PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.245e-16
Identity = 46/112 (41.07%), Postives = 65/112 (58.04%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTM  +KS V T  +G A  +A  LL+ G KG R A+P S + +  P G A+GQ  +I   A E+L+ R  + + L+  +GQ FEK+  D  R     +QEA +YGLID I+
Sbjct:   78 DTMNFIKSDVQTIAMGMAASMASVLLSAGTKGKRFALPNSTVLIHQPLGGAQGQQTEIEIAAREILKTRKRLNQILADNSGQTFEKLQADTDRDNYMTAQEAKDYGLIDDIM 189          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_ANAMM (ATP-dependent Clp protease proteolytic subunit OS=Anaplasma marginale (strain St. Maries) GN=clpP PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.245e-16
Identity = 43/112 (38.39%), Postives = 67/112 (59.82%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +   LLAGGE G R A+P SRI +  P+G  RGQA DI   A E+L ++  + +   + TG+  E+I   + R     +++A ++G++D++I
Sbjct:   96 DTMQYIKPKVSTLCLGQAASMGALLLAGGEPGMRYALPNSRIMVHQPSGGFRGQATDIEIHAREILEIKRRLNEIYVKHTGKSLEEIESSMERDNFMVAEKAKDFGIVDKVI 207          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_ANAMF (ATP-dependent Clp protease proteolytic subunit OS=Anaplasma marginale (strain Florida) GN=clpP PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.245e-16
Identity = 43/112 (38.39%), Postives = 67/112 (59.82%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +   LLAGGE G R A+P SRI +  P+G  RGQA DI   A E+L ++  + +   + TG+  E+I   + R     +++A ++G++D++I
Sbjct:   96 DTMQYIKPKVSTLCLGQAASMGALLLAGGEPGMRYALPNSRIMVHQPSGGFRGQATDIEIHAREILEIKRRLNEIYVKHTGKSLEEIESSMERDNFMVAEKAKDFGIVDKVI 207          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP2_BRAJA (ATP-dependent Clp protease proteolytic subunit 2 OS=Bradyrhizobium japonicum GN=clpP2 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.245e-16
Identity = 44/112 (39.29%), Postives = 66/112 (58.93%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ ++ PV T C G A  +   LLA GEK  R ++P +RI +  P+G  +GQA DI   A E+L ++  + +   + TGQ ++ I   L R K   + +A E+GL+DR+I
Sbjct:   87 DTMQFIRPPVSTLCTGQAASMGSLLLAAGEKDMRFSLPNARIMVHQPSGGFQGQATDIMLHAQEILNLKKRLNEIYVKHTGQTYKTIEDALERDKFLTANDAKEFGLVDRVI 198          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_XANCP (ATP-dependent Clp protease proteolytic subunit OS=Xanthomonas campestris pv. campestris GN=clpP PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.207e-15
Identity = 45/112 (40.18%), Postives = 63/112 (56.25%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T CVG A  +   LLA G  G R A+P SR+ +  P G  +GQA DI   A E+L +R  + + L++ TGQ  E I +D  R     + +A  YGL+D ++
Sbjct:   86 DTMQYIKPDVSTICVGQAASMGALLLASGAAGKRYALPNSRVMIHQPLGGFQGQATDIDIHAREILTLRSRLNEILAKHTGQSLETIARDTERDNFKSAVDAQAYGLVDHVL 197          
The following BLAST results are available for this feature:
BLAST of CB304617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_XANCB9.245e-1640.18ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_XANC59.245e-1640.18ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_XANAC9.245e-1640.18ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_WOLPP9.245e-1639.29ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_VESOH9.245e-1639.29ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LACSS9.245e-1641.07ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ANAMM9.245e-1638.39ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ANAMF9.245e-1638.39ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_BRAJA9.245e-1639.29ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_XANCP1.207e-1540.18ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_E03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_E03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304617 ID=CB304617; Name=CB304617; organism=Citrus sinensis; type=EST; length=627bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAGAGAAAATGTAATGCCT
CTCAAAACAGGCAACCATCAAATTCTTTGTAGGTTTTATTAGATGTAAAT
TACACATTTCAGAGCAAACTTCTACAAGAATAATTCGATTGAGTAGTTAA
TTTTACAAGTAGATGAATGAAATTACGAAAGATAAAATATTTGATGACTT
CAGTCTACTCAGGGGAGAATCAATGAATACACTAACCAAGACCTGTTCCA
GCATCTTTACGAGGCATATCTTCCTTAATACGAGGTGGCCTGATTATACG
ATCTATCAGCCCATATTCAAGAGCCTCCTGGGAACCAAAGCGTTTAATCC
TACTTAAATCCTTCGTAATCTTCTCAAAGGGCTGACCTGTTTTCCTAGAC
AACTCCTTGAAAATGTAATCTCTGACTCTAAGAAGCTCATCTGCTTCATT
ACGAATGTCATCAGCCTGACCGCGAGCTGCACCAGCTGGAGAGTCTAAAG
CAATTCTCGAAAGAGGCATTGCAGACCGATTACCCTTTTCTCCACCTGCT
AGAAGAAACCCTGCTAAATGATAGGCAAAGCCCACACAGTGAGTGCCAAC
AGGACTCTTCAAGCTCTGCATAGTGTC
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