CB304617

Overview
NameCB304617
Unique NameCB304617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_XANC8 (ATP-dependent Clp protease proteolytic subunit OS=Xanthomonas campestris pv. campestris (strain 8004) GN=clpP PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.207e-15
Identity = 45/112 (40.18%), Postives = 63/112 (56.25%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T CVG A  +   LLA G  G R A+P SR+ +  P G  +GQA DI   A E+L +R  + + L++ TGQ  E I +D  R     + +A  YGL+D ++
Sbjct:   86 DTMQYIKPDVSTICVGQAASMGALLLASGAAGKRYALPNSRVMIHQPLGGFQGQATDIDIHAREILTLRSRLNEILAKHTGQSLETIARDTERDNFKSAVDAQAYGLVDHVL 197          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_COXBU (ATP-dependent Clp protease proteolytic subunit OS=Coxiella burnetii GN=clpP PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.207e-15
Identity = 45/113 (39.82%), Postives = 64/113 (56.64%), Query Frame = -1
Query:  289 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIR 627
            DTMQ +K  V T C+G A      LLAGG KG R  +P S + +    G  +GQ  DI+  A +  RV D + + L++ TG+  E++ KD +R      +EA+EYGLID I +
Sbjct:   80 DTMQFVKPDVRTLCIGQAASAGALLLAGGAKGKRHCLPHSSVMIHQVLGGYQGQGTDIQIHAKQTQRVSDQLNQILAKHTGKDIERVEKDTNRDYFLTPEEAVEYGLIDSIFK 192          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_COXBR (ATP-dependent Clp protease proteolytic subunit OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=clpP PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.207e-15
Identity = 45/113 (39.82%), Postives = 64/113 (56.64%), Query Frame = -1
Query:  289 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIR 627
            DTMQ +K  V T C+G A      LLAGG KG R  +P S + +    G  +GQ  DI+  A +  RV D + + L++ TG+  E++ KD +R      +EA+EYGLID I +
Sbjct:   80 DTMQFVKPDVRTLCIGQAASAGALLLAGGAKGKRHCLPHSSVMIHQVLGGYQGQGTDIQIHAKQTQRVSDQLNQILAKHTGKDIERVEKDTNRDYFLTPEEAVEYGLIDSIFK 192          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_BUCAI (ATP-dependent Clp protease proteolytic subunit OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=clpP PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.207e-15
Identity = 43/112 (38.39%), Postives = 65/112 (58.04%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  + T C+G A  +A  LL  G KG R  +P S++ +  P G  +GQA DI   A E++ ++  + K +S  TGQ  +KI KD  R     + ++++YGLID I+
Sbjct:   93 DTMQFVKPEISTICLGQACSMAALLLTSGAKGKRFCLPNSKVMIHQPLGGYQGQASDIAIHAREIMEMKKKLNKLMSFHTGQSIKKINKDTERDCFLSANQSIKYGLIDFIL 204          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_AZOBR (ATP-dependent Clp protease proteolytic subunit OS=Azospirillum brasilense GN=clpP PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.207e-15
Identity = 43/112 (38.39%), Postives = 64/112 (57.14%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ ++  V T C+G A  +   LLA G  G R ++P SRI +  P+G A+GQA DI  +A E+L++R  +     + TGQ  + I   + R K    +EA  +GLID ++
Sbjct:   87 DTMQYIRPQVSTVCMGQAASMGSLLLAAGAPGKRFSLPNSRIMIHQPSGGAQGQASDIEIQAQEILKLRSRLNDIYVKHTGQSLDTIEAXMERDKFMSPEEAKAFGLIDEVV 198          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP2_ARATH (ATP-dependent Clp protease proteolytic subunit 2, mitochondrial OS=Arabidopsis thaliana GN=CLPP2 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.207e-15
Identity = 43/122 (35.25%), Postives = 70/122 (57.38%), Query Frame = -1
Query:  268 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII--RPPRIKED 627
            DTMQ ++SP+ T C+G A  +A  LLA G KG R ++P + + +  P+G   GQA DI     +++RV D + +   + TGQP + +  ++ R      +EA  +G+ID +I  RP  + +D
Sbjct:  108 DTMQYIRSPISTICLGQAASMASLLLAAGAKGQRRSLPNATVMIHQPSGGYSGQAKDITIHTKQIVRVWDALNELYVKHTGQPLDVVANNMDRDHFMTPEEAKAFGIIDEVIDERPLELVKD 229          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP1_MYCLE (ATP-dependent Clp protease proteolytic subunit 1 OS=Mycobacterium leprae GN=clpP1 PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.207e-15
Identity = 43/112 (38.39%), Postives = 63/112 (56.25%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTM      + T+ +G A  +  FLLA G +G R A+P +RI +  P G   G A DI  +A++   ++  +F+  +  TGQP E+I  D  R + F + EALEYG +D II
Sbjct:   79 DTMVLAPCDIATYAMGMAASMGEFLLAAGTRGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTASEALEYGFVDHII 190          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_LAWIP (ATP-dependent Clp protease proteolytic subunit OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=clpP PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.577e-15
Identity = 44/112 (39.29%), Postives = 65/112 (58.04%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTM  +   V T C+G A  +   LLA GEK  R A+P S++ +  P G  +GQA DI   A E+LR+R  + + L  +TGQ  EK+ +D  R     +++A  YGLID+++
Sbjct:   84 DTMNYITPNVATVCMGRAASMGALLLAAGEKNMRYALPNSQVMIHQPLGGYQGQATDIDIHAREILRMRQRLNEILMEQTGQSLEKVAQDTERDYFMTAEDAKAYGLIDKVL 195          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_BRUME (ATP-dependent Clp protease proteolytic subunit OS=Brucella melitensis GN=clpP PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.577e-15
Identity = 41/120 (34.17%), Postives = 70/120 (58.33%), Query Frame = -1
Query:  268 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIKED 627
            DTMQ ++ PV T C+G A  +   LL  G  G+R A+  +RI +  P+G  +GQA DI   A ++++++  + +   + TG+ ++ I + L R     +QEALE+GLID+++    +  D
Sbjct:   87 DTMQFIRPPVSTLCMGQAASMGSLLLTAGATGHRYALLNARIMVHQPSGGFQGQASDIERHAQDIIKMKRRLNEIYVKHTGRDYDTIERTLDRDHFMTAQEALEFGLIDKVVEARDVSAD 206          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_BRUMB (ATP-dependent Clp protease proteolytic subunit OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=clpP PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.577e-15
Identity = 41/120 (34.17%), Postives = 70/120 (58.33%), Query Frame = -1
Query:  268 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIKED 627
            DTMQ ++ PV T C+G A  +   LL  G  G+R A+  +RI +  P+G  +GQA DI   A ++++++  + +   + TG+ ++ I + L R     +QEALE+GLID+++    +  D
Sbjct:   87 DTMQFIRPPVSTLCMGQAASMGSLLLTAGATGHRYALLNARIMVHQPSGGFQGQASDIERHAQDIIKMKRRLNEIYVKHTGRDYDTIERTLDRDHFMTAQEALEFGLIDKVVEARDVSAD 206          
The following BLAST results are available for this feature:
BLAST of CB304617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_XANC81.207e-1540.18ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_COXBU1.207e-1539.82ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_COXBR1.207e-1539.82ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BUCAI1.207e-1538.39ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_AZOBR1.207e-1538.39ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_ARATH1.207e-1535.25ATP-dependent Clp protease proteolytic subunit 2, ... [more]
CLPP1_MYCLE1.207e-1538.39ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_LAWIP1.577e-1539.29ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BRUME1.577e-1534.17ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BRUMB1.577e-1534.17ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_E03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_E03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304617 ID=CB304617; Name=CB304617; organism=Citrus sinensis; type=EST; length=627bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAGAGAAAATGTAATGCCT
CTCAAAACAGGCAACCATCAAATTCTTTGTAGGTTTTATTAGATGTAAAT
TACACATTTCAGAGCAAACTTCTACAAGAATAATTCGATTGAGTAGTTAA
TTTTACAAGTAGATGAATGAAATTACGAAAGATAAAATATTTGATGACTT
CAGTCTACTCAGGGGAGAATCAATGAATACACTAACCAAGACCTGTTCCA
GCATCTTTACGAGGCATATCTTCCTTAATACGAGGTGGCCTGATTATACG
ATCTATCAGCCCATATTCAAGAGCCTCCTGGGAACCAAAGCGTTTAATCC
TACTTAAATCCTTCGTAATCTTCTCAAAGGGCTGACCTGTTTTCCTAGAC
AACTCCTTGAAAATGTAATCTCTGACTCTAAGAAGCTCATCTGCTTCATT
ACGAATGTCATCAGCCTGACCGCGAGCTGCACCAGCTGGAGAGTCTAAAG
CAATTCTCGAAAGAGGCATTGCAGACCGATTACCCTTTTCTCCACCTGCT
AGAAGAAACCCTGCTAAATGATAGGCAAAGCCCACACAGTGAGTGCCAAC
AGGACTCTTCAAGCTCTGCATAGTGTC
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