CB304617

Overview
NameCB304617
Unique NameCB304617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6243 contig Csv1_Contig6243:486..1085. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_BARBK (ATP-dependent Clp protease proteolytic subunit OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=clpP PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.577e-15
Identity = 41/113 (36.28%), Postives = 68/113 (60.18%), Query Frame = -1
Query:  289 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIR 627
            DTMQ ++ P+ T C+G A  +   LL  G KG+R ++P +RI +  P+G  +GQA DI   A +++R++ ++ +   + TGQ +E I   L R     ++EA  +GLID +I+
Sbjct:   87 DTMQFIRPPISTLCMGQAASMGSLLLTAGAKGHRFSLPNARIMVHQPSGGFQGQASDIERHAQDIIRMKRHLNEIYVQHTGQDYEIIENTLDRDHFMTAEEAKMFGLIDDVIQ 199          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP2_CORGL (ATP-dependent Clp protease proteolytic subunit 2 OS=Corynebacterium glutamicum GN=clpP2 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.577e-15
Identity = 42/112 (37.50%), Postives = 67/112 (59.82%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTM+     + T+ +G A  +  FLL+GG KG R A+P +RI +  P+    G A DI  +A++    +  + + ++  TGQ FE+I+KD  R + F +QEA +YGL+D +I
Sbjct:   81 DTMKYSPCDIATYGMGLAASMGQFLLSGGTKGKRFALPHARIMMHQPSAGVGGTAADIAIQAEQFAATKREMAQLIAEHTGQTFEQISKDSDRDRWFTAQEAKDYGLVDHVI 192          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP2_COREF (ATP-dependent Clp protease proteolytic subunit 2 OS=Corynebacterium efficiens GN=clpP2 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.577e-15
Identity = 41/112 (36.61%), Postives = 67/112 (59.82%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTM+     + T+ +G A  +  FLL+GG  G R A+P +RI +  P+    G A DI  +A++  + +  + K ++  TGQ FE++TKD  R + F +++A EYGL+D +I
Sbjct:   79 DTMKYSPCDIATYGMGLAASMGQFLLSGGTPGKRYALPHARIMMHQPSAGVGGTAADIAIQAEQFAQTKREMAKLIAEHTGQTFEQVTKDSDRDRWFTAEQAKEYGLVDHVI 190          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP1_FRASC (ATP-dependent Clp protease proteolytic subunit 1 OS=Frankia sp. (strain CcI3) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.577e-15
Identity = 40/116 (34.48%), Postives = 69/116 (59.48%), Query Frame = -1
Query:  280 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPR 627
            DTMQ +++ V T  +G A  +  FLL  G  G R ++P +RI +  P+G   G A DI  +A+++L  +  + + ++  TGQP E+I +D  R + F ++EA +YG +D +++  R
Sbjct:   89 DTMQFVENDVATVSLGLAASMGQFLLCAGASGKRYSLPHARIMMHQPSGGIGGTASDIAIQAEQMLYTKRMMQERIAFHTGQPIEQIERDSDRDRWFTAEEAKDYGFVDHVVQQAR 204          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_LEGPH (ATP-dependent Clp protease proteolytic subunit OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=clpP PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.060e-15
Identity = 43/112 (38.39%), Postives = 64/112 (57.14%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A   A  LL  G +G R  +P SR+ +  P G  RGQA DI   A E L VR+ +   +++ T +  ++I +D  R     + +A+EYGLID+++
Sbjct:   91 DTMQFIKPDVSTLCIGQAASAAALLLCAGAEGKRFCLPNSRVMIHQPLGGYRGQATDIEIHARETLAVRERLNNIMAKHTKKTPDQIMRDTERDNFMSATQAMEYGLIDKVL 202          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_LEGPC (ATP-dependent Clp protease proteolytic subunit OS=Legionella pneumophila (strain Corby) GN=clpP PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.060e-15
Identity = 43/112 (38.39%), Postives = 64/112 (57.14%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A   A  LL  G +G R  +P SR+ +  P G  RGQA DI   A E L VR+ +   +++ T +  ++I +D  R     + +A+EYGLID+++
Sbjct:   91 DTMQFIKPDVSTLCIGQAASAAALLLCAGAEGKRFCLPNSRVMIHQPLGGYRGQATDIEIHARETLAVRERLNNIMAKHTKKTPDQIMRDTERDNFMSATQAMEYGLIDKVL 202          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_LEGPA (ATP-dependent Clp protease proteolytic subunit OS=Legionella pneumophila (strain Paris) GN=clpP PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.060e-15
Identity = 43/112 (38.39%), Postives = 64/112 (57.14%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A   A  LL  G +G R  +P SR+ +  P G  RGQA DI   A E L VR+ +   +++ T +  ++I +D  R     + +A+EYGLID+++
Sbjct:   91 DTMQFIKPDVSTLCIGQAASAAALLLCAGAEGKRFCLPNSRVMIHQPLGGYRGQATDIEIHARETLAVRERLNNIMAKHTKKTPDQIMRDTERDNFMSATQAMEYGLIDKVL 202          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_COXBN (ATP-dependent Clp protease proteolytic subunit OS=Coxiella burnetii (strain Dugway 5J108-111) GN=clpP PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.060e-15
Identity = 45/111 (40.54%), Postives = 63/111 (56.76%), Query Frame = -1
Query:  295 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 627
            DTMQ +K  V T C+G A      LLAGG KG R  +P S + +    G  +GQ  DI+  A +  RV D + + L++ TG+  E++ KD +R      +EA+EYGLID I
Sbjct:   80 DTMQFVKPDVRTLCIGQAASAGALLLAGGAKGKRHCLPHSSVMIHQVLGGYQGQGTDIQIHAKQTQRVSDQLNQILAKHTGKDIERVEKDTNRDYFLTPEEAVEYGLIDSI 190          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_COXB2 (ATP-dependent Clp protease proteolytic subunit OS=Coxiella burnetii (strain CbuG_Q212) GN=clpP PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.060e-15
Identity = 45/111 (40.54%), Postives = 63/111 (56.76%), Query Frame = -1
Query:  295 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 627
            DTMQ +K  V T C+G A      LLAGG KG R  +P S + +    G  +GQ  DI+  A +  RV D + + L++ TG+  E++ KD +R      +EA+EYGLID I
Sbjct:   80 DTMQFVKPDVRTLCIGQAASAGALLLAGGAKGKRHCLPHSSVMIHQVLGGYQGQGTDIQIHAKQTQRVSDQLNQILAKHTGKDIERVEKDTNRDYFLTPEEAVEYGLIDSI 190          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_COXB1 (ATP-dependent Clp protease proteolytic subunit OS=Coxiella burnetii (strain CbuK_Q154) GN=clpP PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.060e-15
Identity = 45/111 (40.54%), Postives = 63/111 (56.76%), Query Frame = -1
Query:  295 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 627
            DTMQ +K  V T C+G A      LLAGG KG R  +P S + +    G  +GQ  DI+  A +  RV D + + L++ TG+  E++ KD +R      +EA+EYGLID I
Sbjct:   80 DTMQFVKPDVRTLCIGQAASAGALLLAGGAKGKRHCLPHSSVMIHQVLGGYQGQGTDIQIHAKQTQRVSDQLNQILAKHTGKDIERVEKDTNRDYFLTPEEAVEYGLIDSI 190          
The following BLAST results are available for this feature:
BLAST of CB304617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_BARBK1.577e-1536.28ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_CORGL1.577e-1537.50ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_COREF1.577e-1536.61ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_FRASC1.577e-1534.48ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_LEGPH2.060e-1538.39ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LEGPC2.060e-1538.39ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LEGPA2.060e-1538.39ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_COXBN2.060e-1540.54ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_COXB22.060e-1540.54ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_COXB12.060e-1540.54ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_E03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_E03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304617 ID=CB304617; Name=CB304617; organism=Citrus sinensis; type=EST; length=627bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAGAGAAAATGTAATGCCT
CTCAAAACAGGCAACCATCAAATTCTTTGTAGGTTTTATTAGATGTAAAT
TACACATTTCAGAGCAAACTTCTACAAGAATAATTCGATTGAGTAGTTAA
TTTTACAAGTAGATGAATGAAATTACGAAAGATAAAATATTTGATGACTT
CAGTCTACTCAGGGGAGAATCAATGAATACACTAACCAAGACCTGTTCCA
GCATCTTTACGAGGCATATCTTCCTTAATACGAGGTGGCCTGATTATACG
ATCTATCAGCCCATATTCAAGAGCCTCCTGGGAACCAAAGCGTTTAATCC
TACTTAAATCCTTCGTAATCTTCTCAAAGGGCTGACCTGTTTTCCTAGAC
AACTCCTTGAAAATGTAATCTCTGACTCTAAGAAGCTCATCTGCTTCATT
ACGAATGTCATCAGCCTGACCGCGAGCTGCACCAGCTGGAGAGTCTAAAG
CAATTCTCGAAAGAGGCATTGCAGACCGATTACCCTTTTCTCCACCTGCT
AGAAGAAACCCTGCTAAATGATAGGCAAAGCCCACACAGTGAGTGCCAAC
AGGACTCTTCAAGCTCTGCATAGTGTC
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