CB304617

Overview
NameCB304617
Unique NameCB304617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6243 contig Csv1_Contig6243:486..1085. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_ACIAC (ATP-dependent Clp protease proteolytic subunit OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=clpP PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.308e-21
Identity = 50/112 (44.64%), Postives = 70/112 (62.50%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+GFA  +  FLLA G KG R ++P S+I +    G ARGQA DI   A ++LR +D + + L+ +TGQP EK+  D  R     + EA EYGL+D+++
Sbjct:   87 DTMQFIKPDVSTMCLGFAASMGAFLLAAGAKGKRFSLPNSKIMIHQVLGGARGQATDIEIHARDILRTKDQMNRILAERTGQPLEKVKADTERDYFLTADEAKEYGLVDQVV 198          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNY3 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechocystis sp. (strain PCC 6803) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.308e-21
Identity = 52/119 (43.70%), Postives = 73/119 (61.34%), Query Frame = -1
Query:  271 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIKE 627
            DTMQ ++  V T C G A  +  FLL+GG KG R A+P SRI +  P G A+GQA +I  +A E+L ++D +   L   TGQP EK+ +D  R     ++EA EYGLID++I  P + +
Sbjct:   99 DTMQQIRPDVVTICFGLAASMGAFLLSGGCKGKRMALPSSRIMIHQPLGGAQGQAVEIEIQAREILYIKDRLNTMLVEHTGQPMEKLQEDTERDFFMSAEEAKEYGLIDQVISRPNLPD 217          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP2_PROMT (ATP-dependent Clp protease proteolytic subunit 2 OS=Prochlorococcus marinus (strain NATL2A) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.308e-21
Identity = 54/116 (46.55%), Postives = 73/116 (62.93%), Query Frame = -1
Query:  283 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP-AGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPP 627
            DTM+ +KS + T CVG A  +  FLL+ G KG R A+P SRI +  P  G A+ QA DI  EA E+LR+++ + K ++  TGQ +EKI KD  R     ++EA  YGLIDR+I  P
Sbjct:   82 DTMKYVKSDLVTICVGLAASMGAFLLSAGTKGKRLALPHSRIMIHQPLGGTAQRQASDIEIEAREILRIKEMLNKSMAEMTGQTYEKIEKDTDRDYFLSAEEAKNYGLIDRVITHP 197          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP1_METCA (ATP-dependent Clp protease proteolytic subunit 1 OS=Methylococcus capsulatus GN=clpP1 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.308e-21
Identity = 54/112 (48.21%), Postives = 67/112 (59.82%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T CVG A  +   LLAGG  G R  +P SRI +  P G  +GQA DI   A E+L VRD + K L+  TGQP EKI  D  R    G  +A+EYGLID+++
Sbjct:   87 DTMQFIKPDVSTLCVGQAASMGALLLAGGAAGKRYCLPHSRIMIHQPLGGFQGQASDIDIHAREILAVRDRLNKILAHHTGQPIEKIQIDTDRDNFMGGNDAVEYGLIDKVL 198          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_CARHZ (ATP-dependent Clp protease proteolytic subunit OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=clpP PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.545e-21
Identity = 52/112 (46.43%), Postives = 70/112 (62.50%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +  FLLA G KG R ++P +RI +  P G  +GQA DI   A E+LR+RD + + L++ TGQP EKI +D  R     + EA EYG+ID +I
Sbjct:   80 DTMQYIKPDVSTICIGQAASMGAFLLAAGAKGKRFSLPYARIMIHQPLGGVQGQATDIDIHAREILRMRDMLNELLTKHTGQPKEKIERDTERDFFMSAAEAKEYGIIDEVI 191          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_BORPE (ATP-dependent Clp protease proteolytic subunit OS=Bordetella pertussis GN=clpP PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.545e-21
Identity = 48/112 (42.86%), Postives = 72/112 (64.29%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C G A  +  FLLA G+KG R  +P SRI +  P+G A+GQA DI+ +A E+L +R+ + + L+  TGQP E+I  D  R     +++A+ YGL+D+++
Sbjct:  100 DTMQFIKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIHQPSGGAQGQASDIQIQAREILDLRERLNRILAENTGQPVERIAVDTERDNFMSAEDAVSYGLVDKVL 211          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_BORPA (ATP-dependent Clp protease proteolytic subunit OS=Bordetella parapertussis GN=clpP PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.545e-21
Identity = 48/112 (42.86%), Postives = 72/112 (64.29%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C G A  +  FLLA G+KG R  +P SRI +  P+G A+GQA DI+ +A E+L +R+ + + L+  TGQP E+I  D  R     +++A+ YGL+D+++
Sbjct:  100 DTMQFIKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIHQPSGGAQGQASDIQIQAREILDLRERLNRILAENTGQPVERIAVDTERDNFMSAEDAVSYGLVDKVL 211          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_BORBR (ATP-dependent Clp protease proteolytic subunit OS=Bordetella bronchiseptica GN=clpP PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.545e-21
Identity = 48/112 (42.86%), Postives = 72/112 (64.29%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C G A  +  FLLA G+KG R  +P SRI +  P+G A+GQA DI+ +A E+L +R+ + + L+  TGQP E+I  D  R     +++A+ YGL+D+++
Sbjct:  100 DTMQFIKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIHQPSGGAQGQASDIQIQAREILDLRERLNRILAENTGQPVERIAVDTERDNFMSAEDAVSYGLVDKVL 211          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP2_PROM9 (ATP-dependent Clp protease proteolytic subunit 2 OS=Prochlorococcus marinus (strain MIT 9312) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.545e-21
Identity = 55/116 (47.41%), Postives = 72/116 (62.07%), Query Frame = -1
Query:  283 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP-AGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPP 627
            DT++ +KS V T CVG A  +  FLLA G KG R A+P SRI +  P  G ++ QA DI  EA E+LR++D +   ++  TGQ FEKI KD  R     ++EA  YGLIDR+I  P
Sbjct:   82 DTIKYVKSDVVTICVGLAASMGAFLLAAGTKGKRVALPHSRIMIHQPLGGTSQRQASDIEIEAKEILRIKDMLNMSMADMTGQSFEKIEKDTDRDYFLSAEEAKNYGLIDRVITHP 197          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP2_MYXXD (ATP-dependent Clp protease proteolytic subunit 2 OS=Myxococcus xanthus (strain DK 1622) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.545e-21
Identity = 53/122 (43.44%), Postives = 71/122 (58.20%), Query Frame = -1
Query:  262 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIKEDMP 627
            DTMQ +K PV T CVG A  +   LL  G KG R A+P SRI +  P G A+GQA DI  +A E+LR+R YI   + + TG   E+I KD  R     +++A +YGLID ++   R+    P
Sbjct:   78 DTMQYVKCPVSTICVGQAASMGALLLLAGAKGKRYALPNSRIMIHQPLGGAQGQATDIDIQAKEILRLRSYINGLIVKHTGHTIERIEKDTERDYFMSAEDARQYGLIDEVVEKQRVIAPTP 199          
The following BLAST results are available for this feature:
BLAST of CB304617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_ACIAC7.308e-2144.64ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_SYNY37.308e-2143.70ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_PROMT7.308e-2146.55ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_METCA7.308e-2148.21ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_CARHZ9.545e-2146.43ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BORPE9.545e-2142.86ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BORPA9.545e-2142.86ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BORBR9.545e-2142.86ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_PROM99.545e-2147.41ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_MYXXD9.545e-2143.44ATP-dependent Clp protease proteolytic subunit 2 O... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_E03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_E03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304617 ID=CB304617; Name=CB304617; organism=Citrus sinensis; type=EST; length=627bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAGAGAAAATGTAATGCCT
CTCAAAACAGGCAACCATCAAATTCTTTGTAGGTTTTATTAGATGTAAAT
TACACATTTCAGAGCAAACTTCTACAAGAATAATTCGATTGAGTAGTTAA
TTTTACAAGTAGATGAATGAAATTACGAAAGATAAAATATTTGATGACTT
CAGTCTACTCAGGGGAGAATCAATGAATACACTAACCAAGACCTGTTCCA
GCATCTTTACGAGGCATATCTTCCTTAATACGAGGTGGCCTGATTATACG
ATCTATCAGCCCATATTCAAGAGCCTCCTGGGAACCAAAGCGTTTAATCC
TACTTAAATCCTTCGTAATCTTCTCAAAGGGCTGACCTGTTTTCCTAGAC
AACTCCTTGAAAATGTAATCTCTGACTCTAAGAAGCTCATCTGCTTCATT
ACGAATGTCATCAGCCTGACCGCGAGCTGCACCAGCTGGAGAGTCTAAAG
CAATTCTCGAAAGAGGCATTGCAGACCGATTACCCTTTTCTCCACCTGCT
AGAAGAAACCCTGCTAAATGATAGGCAAAGCCCACACAGTGAGTGCCAAC
AGGACTCTTCAAGCTCTGCATAGTGTC
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