CB304617

Overview
NameCB304617
Unique NameCB304617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6243 contig Csv1_Contig6243:486..1085. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_PSYA2 (ATP-dependent Clp protease proteolytic subunit OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=clpP PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.737e-20
Identity = 50/112 (44.64%), Postives = 71/112 (63.39%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTM  +K  V T C+G AY +  FLLA G+KG R A+  +R+ +  P+G A+GQA DI   A E+L+ R  + + L+ +TGQ  EKI KD+ R     ++EA EYGLID ++
Sbjct:  107 DTMNFIKPEVSTICMGGAYSMGSFLLAAGQKGKRYALANARVMIHQPSGGAQGQATDIEINAREILKTRARLNEILAERTGQSVEKIEKDVERDYWLDAKEAKEYGLIDEVL 218          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_MACCJ (ATP-dependent Clp protease proteolytic subunit OS=Macrococcus caseolyticus (strain JCSC5402) GN=clpP PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.737e-20
Identity = 49/114 (42.98%), Postives = 68/114 (59.65%), Query Frame = -1
Query:  286 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRP 627
            DTMQ +K  V T C+G A  +  FLLA G KG R A+P + + +  P G A+GQA +I   A  +L+ R+ + + L+ +TGQP EKI KD  R     + EA  YGLID ++ P
Sbjct:   79 DTMQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAARHILKTREKLNRILAERTGQPIEKIEKDTDRDNFLTADEAKAYGLIDEVMHP 192          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_DIAST (ATP-dependent Clp protease proteolytic subunit OS=Diaphorobacter sp. (strain TPSY) GN=clpP PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.737e-20
Identity = 49/112 (43.75%), Postives = 69/112 (61.61%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C GFA  +  FLLA G KG R ++P S+I +    G ARGQA DI   A ++LR +D + + L+ +TGQP EK+  D  R     + EA +YG++D++I
Sbjct:   87 DTMQFIKPDVSTLCCGFAASMGAFLLAAGAKGKRYSLPNSKIMIHQVLGGARGQATDIEIHARDILRTKDQMNRILAERTGQPIEKVKADTERDYFMTADEAKDYGIVDQVI 198          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_BURS3 (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia sp. (strain 383) GN=clpP PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.737e-20
Identity = 49/112 (43.75%), Postives = 71/112 (63.39%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +  FLLA G KG R A+P SR+ +  P G ARGQA DI  +A E+L +++ + + L++ TGQ  E+I +D  R     S++A  YGLID+++
Sbjct:  102 DTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMIHQPLGGARGQASDIEIQAREILYLKERLNQLLAQHTGQDVERIARDTDRDNFMSSEDAKAYGLIDQVL 213          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNP6 (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.737e-20
Identity = 49/112 (43.75%), Postives = 70/112 (62.50%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTM  ++  V T CVG A  +  FLLA G KG R+++  SRI +  P G A+GQA DI  +A+E+L ++  + + L+ +TGQP  +I  D  R     + EA+EYGLIDR+I
Sbjct:   77 DTMNHIRPDVSTVCVGLAASMGAFLLAAGAKGKRTSLAHSRIMIHQPLGGAQGQAKDIEIQANEILYIKQNLNEVLAERTGQPLSRIEDDTDRDFFMSASEAVEYGLIDRVI 188          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNE7 (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus elongatus (strain PCC 7942) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.737e-20
Identity = 49/112 (43.75%), Postives = 70/112 (62.50%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTM  ++  V T CVG A  +  FLLA G KG R+++  SRI +  P G A+GQA DI  +A+E+L ++  + + L+ +TGQP  +I  D  R     + EA+EYGLIDR+I
Sbjct:   77 DTMNHIRPDVSTVCVGLAASMGAFLLAAGAKGKRTSLAHSRIMIHQPLGGAQGQAKDIEIQANEILYIKQNLNEVLAERTGQPLSRIEDDTDRDFFMSASEAVEYGLIDRVI 188          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_VEREI (ATP-dependent Clp protease proteolytic subunit OS=Verminephrobacter eiseniae (strain EF01-2) GN=clpP PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.187e-20
Identity = 48/112 (42.86%), Postives = 68/112 (60.71%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTM  +K  V T C G A  +  FLLA G KG R A+P S++ +  P G  +GQA +I   A E+L+ R+ + K L+ +TGQP EKI +D  R     + E+ EYGL+D++I
Sbjct:   87 DTMNFIKPDVSTLCTGMAASMGAFLLAAGAKGKRFALPNSKVMIHQPLGGMQGQATEIEIHAREILKTREQLNKILAERTGQPLEKIQRDTERDYFLSADESREYGLVDQVI 198          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_STAAW (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain MW2) GN=clpP PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.187e-20
Identity = 49/114 (42.98%), Postives = 70/114 (61.40%), Query Frame = -1
Query:  286 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRP 627
            DT+Q +K  V T C+G A  +  FLLA G KG R A+P + + +  P G A+GQA +I   A+ +L+ R+ + + LS +TGQ  EKI KD  R     ++EA EYGLID ++ P
Sbjct:   79 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVP 192          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_STAAT (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=clpP PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.187e-20
Identity = 49/114 (42.98%), Postives = 70/114 (61.40%), Query Frame = -1
Query:  286 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRP 627
            DT+Q +K  V T C+G A  +  FLLA G KG R A+P + + +  P G A+GQA +I   A+ +L+ R+ + + LS +TGQ  EKI KD  R     ++EA EYGLID ++ P
Sbjct:   79 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVP 192          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_STAAS (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain MSSA476) GN=clpP PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.187e-20
Identity = 49/114 (42.98%), Postives = 70/114 (61.40%), Query Frame = -1
Query:  286 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRP 627
            DT+Q +K  V T C+G A  +  FLLA G KG R A+P + + +  P G A+GQA +I   A+ +L+ R+ + + LS +TGQ  EKI KD  R     ++EA EYGLID ++ P
Sbjct:   79 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVP 192          
The following BLAST results are available for this feature:
BLAST of CB304617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_PSYA24.737e-2044.64ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_MACCJ4.737e-2042.98ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DIAST4.737e-2043.75ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURS34.737e-2043.75ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP1_SYNP64.737e-2043.75ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP1_SYNE74.737e-2043.75ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_VEREI6.187e-2042.86ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAAW6.187e-2042.98ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAAT6.187e-2042.98ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAAS6.187e-2042.98ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_E03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_E03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304617 ID=CB304617; Name=CB304617; organism=Citrus sinensis; type=EST; length=627bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAGAGAAAATGTAATGCCT
CTCAAAACAGGCAACCATCAAATTCTTTGTAGGTTTTATTAGATGTAAAT
TACACATTTCAGAGCAAACTTCTACAAGAATAATTCGATTGAGTAGTTAA
TTTTACAAGTAGATGAATGAAATTACGAAAGATAAAATATTTGATGACTT
CAGTCTACTCAGGGGAGAATCAATGAATACACTAACCAAGACCTGTTCCA
GCATCTTTACGAGGCATATCTTCCTTAATACGAGGTGGCCTGATTATACG
ATCTATCAGCCCATATTCAAGAGCCTCCTGGGAACCAAAGCGTTTAATCC
TACTTAAATCCTTCGTAATCTTCTCAAAGGGCTGACCTGTTTTCCTAGAC
AACTCCTTGAAAATGTAATCTCTGACTCTAAGAAGCTCATCTGCTTCATT
ACGAATGTCATCAGCCTGACCGCGAGCTGCACCAGCTGGAGAGTCTAAAG
CAATTCTCGAAAGAGGCATTGCAGACCGATTACCCTTTTCTCCACCTGCT
AGAAGAAACCCTGCTAAATGATAGGCAAAGCCCACACAGTGAGTGCCAAC
AGGACTCTTCAAGCTCTGCATAGTGTC
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