CB304628
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: GRP2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.768e-18 Identity = 42/76 (55.26%), Postives = 59/76 (77.63%), Query Frame = -3 Query: 443 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEA 670 + F+GGL+W T D+SL +AF+ +GD++++K+I DRETGRSRGFGFV F DE + AI M+G+ L+GR+I VN A Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.686e-16 Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = -3 Query: 440 FRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 673 +R +VG + W D+ L + FS +G ++ ++++ DRETGRSRGFGFV E M DAI ++GQ+LDGR I VN A+ Sbjct: 230 YRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAE 307
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 4.814e-16 Identity = 36/77 (46.75%), Postives = 56/77 (72.73%), Query Frame = -3 Query: 440 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 670 R +VG L+W D +L E FS G+++++K++ DR++GRSRGFGFV + K + DAI+ +NG +LDGR+I V+ A+ Sbjct: 208 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAE 284
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 8.212e-16 Identity = 36/77 (46.75%), Postives = 56/77 (72.73%), Query Frame = -3 Query: 440 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 670 R +VG L+W D +L E FS G+++++K++ DR++GRSRGFGFV + K + DAI+ +NG +LDGR+I V+ A+ Sbjct: 209 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAE 285
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.072e-15 Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = -3 Query: 440 FRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 673 FR +VG L W + L + FS +G ++E++++ DRETGRSRGFGFV D + +AI ++GQNL+GR I VN A+ Sbjct: 244 FRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAE 321
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: CIRBP_XENTR (Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.401e-15 Identity = 38/78 (48.72%), Postives = 55/78 (70.51%), Query Frame = -3 Query: 443 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEA 676 E + FVGGL + TT+ SL + FS YG + E ++ DRE+ RSRGFGFV F + + +DA+ MNG+++DGR I V++A Sbjct: 5 EGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: CIRBP_PONAB (Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.120e-15 Identity = 39/78 (50.00%), Postives = 54/78 (69.23%), Query Frame = -3 Query: 443 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEA 676 E + FVGGL++ T + SL + FS YG I E ++ DRET RSRGFGFV F + +DA+ MNG+++DGR I V++A Sbjct: 5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: CIRBP_HUMAN (Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.120e-15 Identity = 39/78 (50.00%), Postives = 54/78 (69.23%), Query Frame = -3 Query: 443 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEA 676 E + FVGGL++ T + SL + FS YG I E ++ DRET RSRGFGFV F + +DA+ MNG+++DGR I V++A Sbjct: 5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.075e-15 Identity = 36/77 (46.75%), Postives = 51/77 (66.23%), Query Frame = -3 Query: 440 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 670 R +VG L W S L + FS +G ++ +++++DRETGRSRGFGFV E + DAI ++GQ LDGR + VN A+ Sbjct: 150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAE 226
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 5.323e-15 Identity = 35/78 (44.87%), Postives = 52/78 (66.67%), Query Frame = -3 Query: 440 FRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 673 +R +VG + W D+ L + FS +G ++ ++++ DRE+GRSRGFGFV E M +AI ++GQ LDGR I VN A+ Sbjct: 191 YRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAE 268 The following BLAST results are available for this feature:
BLAST of CB304628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 47
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Sequences
The
following sequences are available for this feature:
EST sequence >CB304628 ID=CB304628; Name=CB304628; organism=Citrus sinensis; type=EST; length=681bpback to top |