CB304628

Overview
NameCB304628
Unique NameCB304628
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2135 contig Csv1_Contig2135:90..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: GRP2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.768e-18
Identity = 42/76 (55.26%), Postives = 59/76 (77.63%), Query Frame = -3
Query:  443 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEA 670
            + F+GGL+W T D+SL +AF+ +GD++++K+I DRETGRSRGFGFV F DE +   AI  M+G+ L+GR+I VN A
Sbjct:   36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111          
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.686e-16
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = -3
Query:  440 FRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 673
            +R +VG + W   D+ L + FS +G ++ ++++ DRETGRSRGFGFV    E  M DAI  ++GQ+LDGR I VN A+
Sbjct:  230 YRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAE 307          
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.814e-16
Identity = 36/77 (46.75%), Postives = 56/77 (72.73%), Query Frame = -3
Query:  440 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 670
            R +VG L+W   D +L E FS  G+++++K++ DR++GRSRGFGFV +   K + DAI+ +NG +LDGR+I V+ A+
Sbjct:  208 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAE 284          
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.212e-16
Identity = 36/77 (46.75%), Postives = 56/77 (72.73%), Query Frame = -3
Query:  440 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 670
            R +VG L+W   D +L E FS  G+++++K++ DR++GRSRGFGFV +   K + DAI+ +NG +LDGR+I V+ A+
Sbjct:  209 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAE 285          
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.072e-15
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = -3
Query:  440 FRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 673
            FR +VG L W   +  L + FS +G ++E++++ DRETGRSRGFGFV   D   + +AI  ++GQNL+GR I VN A+
Sbjct:  244 FRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAE 321          
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: CIRBP_XENTR (Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.401e-15
Identity = 38/78 (48.72%), Postives = 55/78 (70.51%), Query Frame = -3
Query:  443 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEA 676
            E + FVGGL + TT+ SL + FS YG + E  ++ DRE+ RSRGFGFV F + +  +DA+  MNG+++DGR I V++A
Sbjct:    5 EGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: CIRBP_PONAB (Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.120e-15
Identity = 39/78 (50.00%), Postives = 54/78 (69.23%), Query Frame = -3
Query:  443 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEA 676
            E + FVGGL++ T + SL + FS YG I E  ++ DRET RSRGFGFV F +    +DA+  MNG+++DGR I V++A
Sbjct:    5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: CIRBP_HUMAN (Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.120e-15
Identity = 39/78 (50.00%), Postives = 54/78 (69.23%), Query Frame = -3
Query:  443 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEA 676
            E + FVGGL++ T + SL + FS YG I E  ++ DRET RSRGFGFV F +    +DA+  MNG+++DGR I V++A
Sbjct:    5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.075e-15
Identity = 36/77 (46.75%), Postives = 51/77 (66.23%), Query Frame = -3
Query:  440 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 670
            R +VG L W    S L + FS +G ++ +++++DRETGRSRGFGFV    E  + DAI  ++GQ LDGR + VN A+
Sbjct:  150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAE 226          
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.323e-15
Identity = 35/78 (44.87%), Postives = 52/78 (66.67%), Query Frame = -3
Query:  440 FRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 673
            +R +VG + W   D+ L + FS +G ++ ++++ DRE+GRSRGFGFV    E  M +AI  ++GQ LDGR I VN A+
Sbjct:  191 YRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAE 268          
The following BLAST results are available for this feature:
BLAST of CB304628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
GRP2_ARATH1.768e-1855.26Glycine-rich RNA-binding protein 2, mitochondrial ... [more]
ROC4_NICSY3.686e-1647.4431 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC2_NICSY4.814e-1646.7529 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]
ROC2_NICPL8.212e-1646.7531 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC3_ARATH1.072e-1547.4431 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
CIRBP_XENTR1.401e-1548.72Cold-inducible RNA-binding protein OS=Xenopus trop... [more]
CIRBP_PONAB3.120e-1550.00Cold-inducible RNA-binding protein OS=Pongo abelii... [more]
CIRBP_HUMAN3.120e-1550.00Cold-inducible RNA-binding protein OS=Homo sapiens... [more]
ROC1_SPIOL4.075e-1546.7528 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
ROC3_NICSY5.323e-1544.8728 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_F04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_F04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304628 ID=CB304628; Name=CB304628; organism=Citrus sinensis; type=EST; length=681bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTGTAATTCATTTCATTTT
TTTTTTCAAACAATTAACCAAACAGGGAGAACGAAACAACACAGGATAAC
AGGAACCGATCAAAACGACACATCATAACCCAAGGAAAATATCAAAACAC
GGAACGGTAACATTCAACTCCTAATTTATCCTACAAAACCCTAGTTCCTC
CAGCTACCGCCATCAAAAGCACCGCTCCTTGAGTATCGGGAACCACCATC
ACCGCCATATCCACCGTCACGGCTGTAACCACCTTCACGGCGGCCACCAT
ATCCACCGCCGCCACCTCCGTATCCGCGGCTCCCACCGTATCCACCGCCA
CCACCACTTTCACGGCGTCCACCACCTCCATATCCACCACCGCCACGGCT
TCCGTAACCGCCACCGCCACCGCCACCGCTTCCACGGGACTGGGCCTCGT
TGACTGTTATGTTACGGCCGTCCAGATTCTGGCCGTTCATGCCTTCGATT
GCGTCCCTCATCGACTTCTCATCGCGGAAGATAACGAATCCAAATCCTCT
GGATCTTCCAGTCTCGCGATCGTTAATAATCTTCGATTCAAGGATATCGC
CGTAAGCACTGAAGGCCTCATGGAGGGAGCTGTCAGTGGTGGCCCAGGCC
AGGCCGCCTACGAAGCACCGAAACTCGACAT
back to top