CB304628

Overview
NameCB304628
Unique NameCB304628
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2135 contig Csv1_Contig2135:90..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: CIRBP_RANCA (Cold-inducible RNA-binding protein OS=Rana catesbeiana GN=cirbp PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.323e-15
Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = -3
Query:  443 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEA 676
            E + FVGGL++ T +  L   FS YG I E  ++ DRET RSRGFGFV F + +  +DA+ GMNG+ +DGR I V++A
Sbjct:    5 EGKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTVDGRQIRVDQA 82          
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: CIRBP_RAT (Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.952e-15
Identity = 38/78 (48.72%), Postives = 54/78 (69.23%), Query Frame = -3
Query:  443 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEA 676
            E + FVGGL++ T + +L + FS YG I E  ++ DRET RSRGFGFV F +    +DA+  MNG+++DGR I V++A
Sbjct:    5 EGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: CIRBP_MOUSE (Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.952e-15
Identity = 38/78 (48.72%), Postives = 54/78 (69.23%), Query Frame = -3
Query:  443 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEA 676
            E + FVGGL++ T + +L + FS YG I E  ++ DRET RSRGFGFV F +    +DA+  MNG+++DGR I V++A
Sbjct:    5 EGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: CIRBP_CRIGR (Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.952e-15
Identity = 38/78 (48.72%), Postives = 54/78 (69.23%), Query Frame = -3
Query:  443 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEA 676
            E + FVGGL++ T + +L + FS YG I E  ++ DRET RSRGFGFV F +    +DA+  MNG+++DGR I V++A
Sbjct:    5 EGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: CIRBB_XENLA (Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-B PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.186e-14
Identity = 38/78 (48.72%), Postives = 52/78 (66.67%), Query Frame = -3
Query:  443 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEA 676
            E + F+GGL + T + SL + FS YG I E  ++ DRET RSRGFGFV F +    +DA+  MNG+ +DGR I V++A
Sbjct:    4 EGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAVDGRQIRVDQA 81          
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: CIRBA_XENLA (Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-A PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.642e-14
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = -3
Query:  443 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEA 676
            E + F+GGL + T +  L +AF+ YG I E  ++ DRET RSRGFGFV F +    +DA+  MNG+++DGR I V++A
Sbjct:    4 EGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRVDQA 81          
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.450e-14
Identity = 33/77 (42.86%), Postives = 55/77 (71.43%), Query Frame = -3
Query:  440 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 670
            R +VG L+W   D +L   FS  G ++E+++I DR++GRS+GFGFV +   + +++AI+ ++G +LDGR I V+EA+
Sbjct:  205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAE 281          
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: RBM3_MOUSE (Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.506e-14
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = -3
Query:  443 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEA 676
            E + FVGGL + T + +L + FS++G I E  ++ DRET RSRGFGF+ F + +   DA+  MNG++LDGR I V+ A
Sbjct:    5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHA 82          
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 7.686e-14
Identity = 33/77 (42.86%), Postives = 52/77 (67.53%), Query Frame = -3
Query:  440 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 670
            R +VG L+W   D +L   F+  G ++E+++I DR++GRS+GFGFV     + ++ AI  +NG +LDGR I V+EA+
Sbjct:  258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAE 334          
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: RBM3_RAT (Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = -3
Query:  443 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEA 676
            E + FVGGL + T + +L + FS++G I E  ++ DRET RSRGFGF+ F + +   D +  MNG++LDGR I V+ A
Sbjct:    5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMNGESLDGRQIRVDHA 82          
The following BLAST results are available for this feature:
BLAST of CB304628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
CIRBP_RANCA5.323e-1550.00Cold-inducible RNA-binding protein OS=Rana catesbe... [more]
CIRBP_RAT6.952e-1548.72Cold-inducible RNA-binding protein OS=Rattus norve... [more]
CIRBP_MOUSE6.952e-1548.72Cold-inducible RNA-binding protein OS=Mus musculus... [more]
CIRBP_CRIGR6.952e-1548.72Cold-inducible RNA-binding protein OS=Cricetulus g... [more]
CIRBB_XENLA1.186e-1448.72Cold-inducible RNA-binding protein B OS=Xenopus la... [more]
CIRBA_XENLA2.642e-1447.44Cold-inducible RNA-binding protein A OS=Xenopus la... [more]
ROC1_ARATH3.450e-1442.86Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
RBM3_MOUSE4.506e-1447.44Putative RNA-binding protein 3 OS=Mus musculus GN=... [more]
ROC2_ARATH7.686e-1442.8629 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
RBM3_RAT1.311e-1346.15Putative RNA-binding protein 3 OS=Rattus norvegicu... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_F04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_F04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304628 ID=CB304628; Name=CB304628; organism=Citrus sinensis; type=EST; length=681bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTGTAATTCATTTCATTTT
TTTTTTCAAACAATTAACCAAACAGGGAGAACGAAACAACACAGGATAAC
AGGAACCGATCAAAACGACACATCATAACCCAAGGAAAATATCAAAACAC
GGAACGGTAACATTCAACTCCTAATTTATCCTACAAAACCCTAGTTCCTC
CAGCTACCGCCATCAAAAGCACCGCTCCTTGAGTATCGGGAACCACCATC
ACCGCCATATCCACCGTCACGGCTGTAACCACCTTCACGGCGGCCACCAT
ATCCACCGCCGCCACCTCCGTATCCGCGGCTCCCACCGTATCCACCGCCA
CCACCACTTTCACGGCGTCCACCACCTCCATATCCACCACCGCCACGGCT
TCCGTAACCGCCACCGCCACCGCCACCGCTTCCACGGGACTGGGCCTCGT
TGACTGTTATGTTACGGCCGTCCAGATTCTGGCCGTTCATGCCTTCGATT
GCGTCCCTCATCGACTTCTCATCGCGGAAGATAACGAATCCAAATCCTCT
GGATCTTCCAGTCTCGCGATCGTTAATAATCTTCGATTCAAGGATATCGC
CGTAAGCACTGAAGGCCTCATGGAGGGAGCTGTCAGTGGTGGCCCAGGCC
AGGCCGCCTACGAAGCACCGAAACTCGACAT
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