CB304628

Overview
NameCB304628
Unique NameCB304628
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2135 contig Csv1_Contig2135:90..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: RT19_ARATH (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana GN=RPS19 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.236e-13
Identity = 35/77 (45.45%), Postives = 54/77 (70.13%), Query Frame = -3
Query:  440 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 670
            + ++GGL+  T + SL +AFS++  + E++++ ++ TGRSRG+GFV F  E S   AI  MNGQ L+G NI+VN A+
Sbjct:   32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAK 108          
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: RBM3_HUMAN (Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.982e-13
Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = -3
Query:  443 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEA 676
            E + FVGGL + T + +L + FS++G I E  ++ DRET RSRGFGF+ F + +    A+  MNG++LDGR I V+ A
Sbjct:    5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDHA 82          
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.498e-13
Identity = 32/77 (41.56%), Postives = 52/77 (67.53%), Query Frame = -3
Query:  440 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 670
            R +VG LAW     +L   FS  G ++++K++ DR++GRSRGFGFV +   + + +AIE ++G +L+GR I V+ A+
Sbjct:  189 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 265          
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.498e-13
Identity = 32/77 (41.56%), Postives = 52/77 (67.53%), Query Frame = -3
Query:  440 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 670
            R +VG LAW     +L   FS  G ++++K++ DR++GRSRGFGFV +   + + +AIE ++G +L+GR I V+ A+
Sbjct:  195 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 271          
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: HNRPG_PANTR (Heterogeneous nuclear ribonucleoprotein G OS=Pan troglodytes GN=RBMX PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.395e-12
Identity = 33/76 (43.42%), Postives = 46/76 (60.53%), Query Frame = -3
Query:  443 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEA 670
            + F+GGL   T + +L   F  YG I+E  ++ DRET +SRGF FV F      +DA   MNG++LDG+ I V +A
Sbjct:    9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84          
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: HNRPG_HUMAN (Heterogeneous nuclear ribonucleoprotein G OS=Homo sapiens GN=RBMX PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 9.395e-12
Identity = 33/76 (43.42%), Postives = 46/76 (60.53%), Query Frame = -3
Query:  443 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEA 670
            + F+GGL   T + +L   F  YG I+E  ++ DRET +SRGF FV F      +DA   MNG++LDG+ I V +A
Sbjct:    9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84          
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: RBM38_CHICK (RNA-binding protein 38 OS=Gallus gallus GN=RBM38 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = -3
Query:  443 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEA 670
            + FVGGL + TTDSSL + F  +GDI E+ +I DR+TG+SRG+GFV   D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: RBM24_XENTR (RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = -3
Query:  443 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEA 670
            + FVGGL + TTDSSL + F  +GDI E+ +I DR+TG+SRG+GFV   D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: RBM24_CHICK (RNA-binding protein 24 OS=Gallus gallus GN=RBM24 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = -3
Query:  443 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEA 670
            + FVGGL + TTDSSL + F  +GDI E+ +I DR+TG+SRG+GFV   D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: RB24B_XENLA (RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-B PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = -3
Query:  443 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEA 670
            + FVGGL + TTDSSL + F  +GDI E+ +I DR+TG+SRG+GFV   D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
The following BLAST results are available for this feature:
BLAST of CB304628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
RT19_ARATH2.236e-1345.4540S ribosomal protein S19, mitochondrial OS=Arabid... [more]
RBM3_HUMAN4.982e-1346.15Putative RNA-binding protein 3 OS=Homo sapiens GN=... [more]
ROC1_NICSY8.498e-1341.5629 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
ROC1_NICPL8.498e-1341.5630 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
HNRPG_PANTR9.395e-1243.42Heterogeneous nuclear ribonucleoprotein G OS=Pan t... [more]
HNRPG_HUMAN9.395e-1243.42Heterogeneous nuclear ribonucleoprotein G OS=Homo ... [more]
RBM38_CHICK2.734e-1147.37RNA-binding protein 38 OS=Gallus gallus GN=RBM38 P... [more]
RBM24_XENTR2.734e-1147.37RNA-binding protein 24 OS=Xenopus tropicalis GN=rb... [more]
RBM24_CHICK2.734e-1147.37RNA-binding protein 24 OS=Gallus gallus GN=RBM24 P... [more]
RB24B_XENLA2.734e-1147.37RNA-binding protein 24-B OS=Xenopus laevis GN=rbm2... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_F04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_F04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304628 ID=CB304628; Name=CB304628; organism=Citrus sinensis; type=EST; length=681bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTGTAATTCATTTCATTTT
TTTTTTCAAACAATTAACCAAACAGGGAGAACGAAACAACACAGGATAAC
AGGAACCGATCAAAACGACACATCATAACCCAAGGAAAATATCAAAACAC
GGAACGGTAACATTCAACTCCTAATTTATCCTACAAAACCCTAGTTCCTC
CAGCTACCGCCATCAAAAGCACCGCTCCTTGAGTATCGGGAACCACCATC
ACCGCCATATCCACCGTCACGGCTGTAACCACCTTCACGGCGGCCACCAT
ATCCACCGCCGCCACCTCCGTATCCGCGGCTCCCACCGTATCCACCGCCA
CCACCACTTTCACGGCGTCCACCACCTCCATATCCACCACCGCCACGGCT
TCCGTAACCGCCACCGCCACCGCCACCGCTTCCACGGGACTGGGCCTCGT
TGACTGTTATGTTACGGCCGTCCAGATTCTGGCCGTTCATGCCTTCGATT
GCGTCCCTCATCGACTTCTCATCGCGGAAGATAACGAATCCAAATCCTCT
GGATCTTCCAGTCTCGCGATCGTTAATAATCTTCGATTCAAGGATATCGC
CGTAAGCACTGAAGGCCTCATGGAGGGAGCTGTCAGTGGTGGCCCAGGCC
AGGCCGCCTACGAAGCACCGAAACTCGACAT
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