CB304628

Overview
NameCB304628
Unique NameCB304628
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2135 contig Csv1_Contig2135:90..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: RB24A_XENLA (RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-A PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = -3
Query:  443 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEA 670
            + FVGGL + TTDSSL + F  +GDI E+ +I DR+TG+SRG+GFV   D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: HNRPG_RAT (Heterogeneous nuclear ribonucleoprotein G OS=Rattus norvegicus GN=Rbmx PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 32/76 (42.11%), Postives = 45/76 (59.21%), Query Frame = -3
Query:  443 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEA 670
            + F+GGL   T + +L   F  YG I+E  ++ DRET +SRGF FV F      +D    MNG++LDG+ I V +A
Sbjct:    9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDMNGKSLDGKAIKVEQA 84          
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: RBM38_HUMAN (RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = -3
Query:  443 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEA 670
            + FVGGL + TTD+SL + F  +GDI E+ +I DR+TG+SRG+GFV   D  +   A +  N   +DGR   VN A
Sbjct:   35 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 109          
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: HNRPG_MOUSE (Heterogeneous nuclear ribonucleoprotein G OS=Mus musculus GN=Rbmx PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11
Identity = 32/76 (42.11%), Postives = 45/76 (59.21%), Query Frame = -3
Query:  443 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEA 670
            + F+GGL   T + +L   F  YG I+E  ++ DRET +SRGF FV        +DA   MNG++LDG+ I V +A
Sbjct:    9 KLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARDMNGKSLDGKAIKVEQA 84          
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 30/76 (39.47%), Postives = 47/76 (61.84%), Query Frame = -3
Query:  443 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEA 670
            + +V  L+WA T   L +AF+     + +K+I DR +GRSRGFGF+ F   ++M  A++ MN   L+GR + +N A
Sbjct:  218 KLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVA 293          
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: RBM38_XENTR (RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = -3
Query:  443 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEA 670
            + FVGGL + TTD+SL + F  +GDI E+ +I DR+TG+SRG+GFV   D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: HNRPG_BOVIN (Heterogeneous nuclear ribonucleoprotein G OS=Bos taurus GN=RBMX PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 32/76 (42.11%), Postives = 45/76 (59.21%), Query Frame = -3
Query:  443 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEA 670
            + F+GGL   T + SL   F  YG I E  ++ DRET +SRGF F+ F      + A+  MNG++LDG+ I V +A
Sbjct:    9 KLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVRDMNGKSLDGKAIKVAQA 84          
The following BLAST results are available for this feature:
BLAST of CB304628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
RB24A_XENLA2.734e-1147.37RNA-binding protein 24-A OS=Xenopus laevis GN=rbm2... [more]
HNRPG_RAT2.734e-1142.11Heterogeneous nuclear ribonucleoprotein G OS=Rattu... [more]
RBM38_HUMAN6.090e-1146.05RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE... [more]
HNRPG_MOUSE6.090e-1142.11Heterogeneous nuclear ribonucleoprotein G OS=Mus m... [more]
ROC5_NICSY7.954e-1139.4733 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
RBM38_XENTR7.954e-1146.05RNA-binding protein 38 OS=Xenopus tropicalis GN=rb... [more]
HNRPG_BOVIN7.954e-1142.11Heterogeneous nuclear ribonucleoprotein G OS=Bos t... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_F04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_F04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304628 ID=CB304628; Name=CB304628; organism=Citrus sinensis; type=EST; length=681bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTGTAATTCATTTCATTTT
TTTTTTCAAACAATTAACCAAACAGGGAGAACGAAACAACACAGGATAAC
AGGAACCGATCAAAACGACACATCATAACCCAAGGAAAATATCAAAACAC
GGAACGGTAACATTCAACTCCTAATTTATCCTACAAAACCCTAGTTCCTC
CAGCTACCGCCATCAAAAGCACCGCTCCTTGAGTATCGGGAACCACCATC
ACCGCCATATCCACCGTCACGGCTGTAACCACCTTCACGGCGGCCACCAT
ATCCACCGCCGCCACCTCCGTATCCGCGGCTCCCACCGTATCCACCGCCA
CCACCACTTTCACGGCGTCCACCACCTCCATATCCACCACCGCCACGGCT
TCCGTAACCGCCACCGCCACCGCCACCGCTTCCACGGGACTGGGCCTCGT
TGACTGTTATGTTACGGCCGTCCAGATTCTGGCCGTTCATGCCTTCGATT
GCGTCCCTCATCGACTTCTCATCGCGGAAGATAACGAATCCAAATCCTCT
GGATCTTCCAGTCTCGCGATCGTTAATAATCTTCGATTCAAGGATATCGC
CGTAAGCACTGAAGGCCTCATGGAGGGAGCTGTCAGTGGTGGCCCAGGCC
AGGCCGCCTACGAAGCACCGAAACTCGACAT
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