CB304629

Overview
NameCB304629
Unique NameCB304629
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: THIK_YEAST (3-ketoacyl-CoA thiolase, peroxisomal OS=Saccharomyces cerevisiae GN=FOX3 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.721e-27
Identity = 61/141 (43.26%), Postives = 86/141 (60.99%), Query Frame = -2
Query:  271 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 693
            L  +RP+F ++ GT TAGNAS +SDG   ++L       +L L V+ +   +      PE+    PA AIPK +   GL+   +D +EINEAFA  AL     LG++ +KVN  GGA+ALGHPLGC+GAR + T+L  L++
Sbjct:  254 LSSIRPAFIKDRGTTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYIDFQTVGVPPEIMGVGPAYAIPKVLEATGLQVQDIDIFEINEAFAAQALYCIHKLGIDLNKVNPRGGAIALGHPLGCTGARQVATILRELKK 394          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_SALTY (3-ketoacyl-CoA thiolase OS=Salmonella typhimurium GN=fadA PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.721e-27
Identity = 66/149 (44.30%), Postives = 95/149 (63.76%), Query Frame = -2
Query:  256 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLN---PDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 693
            L  LRP+F    GTVTAG +S++SDGA A++++S  +  +LGL+  A+I   A     P +    P  A   A+  AGL AS +D +E+NEAFA   L   K LGL     +K+N++GGA+ALGHPLGCSGARI  TL+ ++ +K+ ++
Sbjct:  219 LSTLRPAFDPVSGTVTAGTSSALSDGAAAMLVMSESRARELGLKPRARIRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIDVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLINLMERKDAQF 367          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_SALTI (3-ketoacyl-CoA thiolase OS=Salmonella typhi GN=fadA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.721e-27
Identity = 66/149 (44.30%), Postives = 95/149 (63.76%), Query Frame = -2
Query:  256 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLN---PDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 693
            L  LRP+F    GTVTAG +S++SDGA A++++S  +  +LGL+  A+I   A     P +    P  A   A+  AGL AS +D +E+NEAFA   L   K LGL     +K+N++GGA+ALGHPLGCSGARI  TL+ ++ +K+ ++
Sbjct:  219 LSTLRPAFDPVSGTVTAGTSSALSDGAAAMLVMSESRARELGLKPRARIRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIDVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLINLMERKDAQF 367          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_SALPA (3-ketoacyl-CoA thiolase OS=Salmonella paratyphi A GN=fadA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.721e-27
Identity = 66/149 (44.30%), Postives = 95/149 (63.76%), Query Frame = -2
Query:  256 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLN---PDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 693
            L  LRP+F    GTVTAG +S++SDGA A++++S  +  +LGL+  A+I   A     P +    P  A   A+  AGL AS +D +E+NEAFA   L   K LGL     +K+N++GGA+ALGHPLGCSGARI  TL+ ++ +K+ ++
Sbjct:  219 LSTLRPAFDPVSGTVTAGTSSALSDGAAAMLVMSESRARELGLKPRARIRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIDVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLINLMERKDAQF 367          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_SALCH (3-ketoacyl-CoA thiolase OS=Salmonella choleraesuis GN=fadA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.721e-27
Identity = 66/149 (44.30%), Postives = 95/149 (63.76%), Query Frame = -2
Query:  256 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLN---PDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 693
            L  LRP+F    GTVTAG +S++SDGA A++++S  +  +LGL+  A+I   A     P +    P  A   A+  AGL AS +D +E+NEAFA   L   K LGL     +K+N++GGA+ALGHPLGCSGARI  TL+ ++ +K+ ++
Sbjct:  219 LSTLRPAFDPVSGTVTAGTSSALSDGAAAMLVMSESRARELGLKPRARIRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIDVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLINLMERKDAQF 367          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: THIM_PONAB (3-ketoacyl-CoA thiolase, mitochondrial OS=Pongo abelii GN=ACAA2 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.139e-26
Identity = 68/147 (46.26%), Postives = 93/147 (63.27%), Query Frame = -2
Query:  256 KLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 696
            +L+KL P FK++G TVTAGNAS I+DGA A+++ S + V K     +A+I GY  +   P +    P  AI  A+  AGL    +D  E+NEAFA   LA ++ L L+  K NV+GGA+ALGHPLG SG+RI   L+  LR++  KY
Sbjct:  231 QLQKLPPVFKKDG-TVTAGNASGIADGAGAVIIASEDAVKKHNFTPLARIVGYFVSGCDPSIMGIGPVPAISGALKKAGLSLKDMDLVEVNEAFAPQYLAVERSLDLDISKTNVNGGAIALGHPLGGSGSRITAHLVHELRRRGGKY 376          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_YERE8 (3-ketoacyl-CoA thiolase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=fadA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.139e-26
Identity = 67/151 (44.37%), Postives = 95/151 (62.91%), Query Frame = -2
Query:  256 AKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGL---NPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 699
            A L  LRP+F    GTVTAG +S++SDGA+A++++S  +   LGL   A+I   A     P +    P  A   A+  AGL+   +  +E+NEAFA  +LA  K LGL     DKVN++GGA+ALGHPLGCSGARI  TLL ++ +++ ++
Sbjct:  217 AGLAALRPAFDPVNGTVTAGTSSALSDGASAMLIMSESRAKSLGLTPRARIRSMAVVGCDPSIMGYGPVPASQLALKRAGLKLEDIGLFELNEAFAAQSLACLKGLGLLESMDDKVNLNGGAIALGHPLGCSGARISTTLLNLMERRDVQF 367          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: THIM_RAT (3-ketoacyl-CoA thiolase, mitochondrial OS=Rattus norvegicus GN=Acaa2 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.488e-26
Identity = 67/147 (45.58%), Postives = 90/147 (61.22%), Query Frame = -2
Query:  256 KLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 696
            +L+ L P FK+ G TVTAGNAS +SDGA  +++ S + V K     +A++ GY  +   P +    P  AI  A+  AGL    +D  ++NEAFA   LA QK L L+P K NV GGA+ALGHPLG SG+RI   L+  LR++  KY
Sbjct:  231 QLQNLPPVFKKEG-TVTAGNASGMSDGAGVVIIASEDAVKKHNFTPLARVVGYFVSGCDPAIMGIGPVPAITGALKKAGLSLKDMDLIDVNEAFAPQFLAVQKSLDLDPSKTNVSGGAIALGHPLGGSGSRITAHLVHELRRRGGKY 376          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: THIM_HUMAN (3-ketoacyl-CoA thiolase, mitochondrial OS=Homo sapiens GN=ACAA2 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.488e-26
Identity = 67/147 (45.58%), Postives = 93/147 (63.27%), Query Frame = -2
Query:  256 KLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 696
            +L+KL P FK++G TVTAGNAS ++DGA A+++ S + V K     +A+I GY  +   P +    P  AI  A+  AGL    +D  E+NEAFA   LA ++ L L+  K NV+GGA+ALGHPLG SG+RI   L+  LR++  KY
Sbjct:  231 QLQKLPPVFKKDG-TVTAGNASGVADGAGAVIIASEDAVKKHNFTPLARIVGYFVSGCDPSIMGIGPVPAISGALKKAGLSLKDMDLVEVNEAFAPQYLAVERSLDLDISKTNVNGGAIALGHPLGGSGSRITAHLVHELRRRGGKY 376          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_SERP5 (3-ketoacyl-CoA thiolase OS=Serratia proteamaculans (strain 568) GN=fadA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.488e-26
Identity = 66/151 (43.71%), Postives = 94/151 (62.25%), Query Frame = -2
Query:  256 AKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGL---NPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 699
            A L  LRP+F    GTVTAG +S++SDGA+A++L+S  +   LGL+  A+I   A     P +    P  A   A+  AGL    +D +E+NEAFA  +L   K LGL     DK+N++GGA+ALGHPLGCSG+RI  TLL  + +++ ++
Sbjct:  217 ASLAALRPAFDPVNGTVTAGTSSALSDGASAMLLMSESRAKALGLKARARIRSMAVVGCDPSIMGYGPVPASKLALKRAGLSVQDIDLFELNEAFAAQSLPCIKDLGLLDSIDDKINLNGGAIALGHPLGCSGSRISTTLLNNMERRDVQF 367          
The following BLAST results are available for this feature:
BLAST of CB304629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
THIK_YEAST8.721e-2743.263-ketoacyl-CoA thiolase, peroxisomal OS=Saccharomy... [more]
FADA_SALTY8.721e-2744.303-ketoacyl-CoA thiolase OS=Salmonella typhimurium ... [more]
FADA_SALTI8.721e-2744.303-ketoacyl-CoA thiolase OS=Salmonella typhi GN=fad... [more]
FADA_SALPA8.721e-2744.303-ketoacyl-CoA thiolase OS=Salmonella paratyphi A ... [more]
FADA_SALCH8.721e-2744.303-ketoacyl-CoA thiolase OS=Salmonella choleraesuis... [more]
THIM_PONAB1.139e-2646.263-ketoacyl-CoA thiolase, mitochondrial OS=Pongo ab... [more]
FADA_YERE81.139e-2644.373-ketoacyl-CoA thiolase OS=Yersinia enterocolitica... [more]
THIM_RAT1.488e-2645.583-ketoacyl-CoA thiolase, mitochondrial OS=Rattus n... [more]
THIM_HUMAN1.488e-2645.583-ketoacyl-CoA thiolase, mitochondrial OS=Homo sap... [more]
FADA_SERP51.488e-2643.713-ketoacyl-CoA thiolase OS=Serratia proteamaculans... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_F05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_F05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304629 ID=CB304629; Name=CB304629; organism=Citrus sinensis; type=EST; length=718bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAGCAAAGCCAGCCAGATA
ATTATTATCTTTTTATTGAAGACGAAAGCACATATGAATAAGAAATGGAG
ATACAATTGCACAACACCCCACCCAAATGGGCCATAATTATCCTCCACAA
GAAGGGTGCAACCTCGTTGATAATAATCCGAACAGAAAATGCTTACACAA
GCTCTACAACAAGTGCCGATGCACCTCCTCCTCCGTTGCAAACGCCACCA
ACACCGTATTTCCAGTTTTTCTGCCTAAGTACCCCCAAAAGTGTGACCAA
GATACGAGCTCCGCTGCAGCCCAGAGGATGTCCCAAAGCTACTGCTCCAC
CATGGACATTAACCTTGTCAGGATTTAGTCCAAGCAATTTCTGGTTTGCA
AGGGCGACGACAGCAAAGGCCTCATTTATTTCGTAACAGTCAACTTGAGA
AGCCTCCAAGCCAGCATTTGAAATGGCTTTAGGTATGGCTAGGGCTGGAG
CTGTTGTAAACATCTCTGGTGCCTGAGCAGCATCAGCATATCCTGTGATC
TTGGCGATCACTTGCAAACCCAGCTTAAGTACCTTCTCTCCACTGACTAG
AACTAATGCTGTAGCTCCATCACTTATACTAGAGGCATTGCCAGCCGTAA
CAGTTCCTCCATTCTCCTTGAAACTTGGTCGAAGCTTCCTCAATTTTGCC
GGGTCAAACTTGCCTAAA
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