CB304629

Overview
NameCB304629
Unique NameCB304629
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_ACIBY (3-ketoacyl-CoA thiolase OS=Acinetobacter baumannii (strain AYE) GN=fadA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.328e-26
Identity = 70/167 (41.92%), Postives = 96/167 (57.49%), Query Frame = -2
Query:  196 RKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGL--NPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVELV 690
            + L+P F   GG+VTA  +S++SDGA+A++L+S E+   LGL+  A I   A A     +    P  A  KA+  AGL  + +   E+NEAFA   L+  K LGL    D VN++GGA+ALGHPLGCSGARI  TLL V+ Q++ +              A V+E V
Sbjct:  224 KALKPVFDPKGGSVTAATSSALSDGASAMLLMSAERAQALGLKPRAVIRSMAVAGCDAAIMGYGPVPATQKALKRAGLSIADIQTVELNEAFAAQGLSVLKGLGLYDKQDIVNLNGGAIALGHPLGCSGARITTTLLNVMEQQDTQIGLATMCIGLGQGIATVIERV 390          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_ACIBT (3-ketoacyl-CoA thiolase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=fadA PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.328e-26
Identity = 70/167 (41.92%), Postives = 96/167 (57.49%), Query Frame = -2
Query:  196 RKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGL--NPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVELV 690
            + L+P F   GG+VTA  +S++SDGA+A++L+S E+   LGL+  A I   A A     +    P  A  KA+  AGL  + +   E+NEAFA   L+  K LGL    D VN++GGA+ALGHPLGCSGARI  TLL V+ Q++ +              A V+E V
Sbjct:  224 KALKPVFDPKGGSVTAATSSALSDGASAMLLMSAERAQALGLKPRAVIRSMAVAGCDAAIMGYGPVPATQKALKRAGLSIADIQTVELNEAFAAQGLSVLKGLGLYDKQDIVNLNGGAIALGHPLGCSGARITTTLLNVMEQQDTQIGLATMCIGLGQGIATVIERV 390          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_ACIBS (3-ketoacyl-CoA thiolase OS=Acinetobacter baumannii (strain SDF) GN=fadA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.328e-26
Identity = 70/167 (41.92%), Postives = 96/167 (57.49%), Query Frame = -2
Query:  196 RKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGL--NPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVELV 690
            + L+P F   GG+VTA  +S++SDGA+A++L+S E+   LGL+  A I   A A     +    P  A  KA+  AGL  + +   E+NEAFA   L+  K LGL    D VN++GGA+ALGHPLGCSGARI  TLL V+ Q++ +              A V+E V
Sbjct:  224 KALKPVFDPKGGSVTAATSSALSDGASAMLLMSAERAQALGLKPRAVIRSMAVAGCDAAIMGYGPVPATQKALKRAGLSIADIQTVELNEAFAAQGLSVLKGLGLYDKQDIVNLNGGAIALGHPLGCSGARITTTLLNVMEQQDTQIGLATMCIGLGQGIATVIERV 390          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_ACIBC (3-ketoacyl-CoA thiolase OS=Acinetobacter baumannii (strain ACICU) GN=fadA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.328e-26
Identity = 70/167 (41.92%), Postives = 96/167 (57.49%), Query Frame = -2
Query:  196 RKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGL--NPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVELV 690
            + L+P F   GG+VTA  +S++SDGA+A++L+S E+   LGL+  A I   A A     +    P  A  KA+  AGL  + +   E+NEAFA   L+  K LGL    D VN++GGA+ALGHPLGCSGARI  TLL V+ Q++ +              A V+E V
Sbjct:  224 KALKPVFDPKGGSVTAATSSALSDGASAMLLMSAERAQALGLKPRAVIRSMAVAGCDAAIMGYGPVPATQKALKRAGLSIADIQTVELNEAFAAQGLSVLKGLGLYDKQDIVNLNGGAIALGHPLGCSGARITTTLLNVMEQQDTQIGLATMCIGLGQGIATVIERV 390          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_ACIB5 (3-ketoacyl-CoA thiolase OS=Acinetobacter baumannii (strain AB0057) GN=fadA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.328e-26
Identity = 70/167 (41.92%), Postives = 96/167 (57.49%), Query Frame = -2
Query:  196 RKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGL--NPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVELV 690
            + L+P F   GG+VTA  +S++SDGA+A++L+S E+   LGL+  A I   A A     +    P  A  KA+  AGL  + +   E+NEAFA   L+  K LGL    D VN++GGA+ALGHPLGCSGARI  TLL V+ Q++ +              A V+E V
Sbjct:  224 KALKPVFDPKGGSVTAATSSALSDGASAMLLMSAERAQALGLKPRAVIRSMAVAGCDAAIMGYGPVPATQKALKRAGLSIADIQTVELNEAFAAQGLSVLKGLGLYDKQDIVNLNGGAIALGHPLGCSGARITTTLLNVMEQQDTQIGLATMCIGLGQGIATVIERV 390          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_ACIB3 (3-ketoacyl-CoA thiolase OS=Acinetobacter baumannii (strain AB307-0294) GN=fadA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.328e-26
Identity = 70/167 (41.92%), Postives = 96/167 (57.49%), Query Frame = -2
Query:  196 RKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGL--NPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVELV 690
            + L+P F   GG+VTA  +S++SDGA+A++L+S E+   LGL+  A I   A A     +    P  A  KA+  AGL  + +   E+NEAFA   L+  K LGL    D VN++GGA+ALGHPLGCSGARI  TLL V+ Q++ +              A V+E V
Sbjct:  224 KALKPVFDPKGGSVTAATSSALSDGASAMLLMSAERAQALGLKPRAVIRSMAVAGCDAAIMGYGPVPATQKALKRAGLSIADIQTVELNEAFAAQGLSVLKGLGLYDKQDIVNLNGGAIALGHPLGCSGARITTTLLNVMEQQDTQIGLATMCIGLGQGIATVIERV 390          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: PCAF_ACIAD (Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. (strain ADP1) GN=pcaF PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.653e-26
Identity = 74/168 (44.05%), Postives = 94/168 (55.95%), Query Frame = -2
Query:  196 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPD--KVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVELV 693
            L KL+   K  G +VTAGNAS I+DGA A+++ S E V +  L+  AKI         P +   APA AI K +  A L   Q+D  E+NEAFA  ALA  + LGL  D  +VN +GGA+ALGHPLG SGAR++ T L  L Q   KY             AL++E V
Sbjct:  235 LAKLKGVVKPEG-SVTAGNASGINDGAAAVLIASDEAVAQYQLKARAKIIASTTVGIEPRIMGFAPAPAIKKLLKQANLTLDQMDVIELNEAFAAQALACTRDLGLADDDARVNPNGGAIALGHPLGASGARLVTTALNQLEQSGGKYALCSMCIGVGQGIALIIERV 401          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_SHISS (3-ketoacyl-CoA thiolase OS=Shigella sonnei (strain Ss046) GN=fadA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.653e-26
Identity = 65/149 (43.62%), Postives = 93/149 (62.42%), Query Frame = -2
Query:  256 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLN---PDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 693
            L  LRP+F    GTVTAG +S++SDGA A++++S  +  +LGL+  A++   A     P +    P  A   A+  AGL AS +  +E+NEAFA   L   K LGL     +K+N++GGA+ALGHPLGCSGARI  TLL ++  K+ ++
Sbjct:  219 LATLRPAFDPVSGTVTAGTSSALSDGAAAMLVMSESRARELGLKPRARVRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMEHKDVQF 367          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_SHIFL (3-ketoacyl-CoA thiolase OS=Shigella flexneri GN=fadA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.653e-26
Identity = 65/149 (43.62%), Postives = 94/149 (63.09%), Query Frame = -2
Query:  256 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLN---PDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 693
            L  LRP+F    GTVTAG +S++SDGA A++++S  +  +LGL+  A++   A     P +    P  A   A+  AGL AS +  +E+NEAFA   L   K LGL     +K+N++GGA+ALGHPLGCSGARI  TLL ++ +K+ ++
Sbjct:  219 LATLRPAFDPVNGTVTAGTSSALSDGAAAMLVMSESRAHELGLKPRARVRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMERKDVQF 367          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_SHIF8 (3-ketoacyl-CoA thiolase OS=Shigella flexneri serotype 5b (strain 8401) GN=fadA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.653e-26
Identity = 65/149 (43.62%), Postives = 94/149 (63.09%), Query Frame = -2
Query:  256 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLN---PDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 693
            L  LRP+F    GTVTAG +S++SDGA A++++S  +  +LGL+  A++   A     P +    P  A   A+  AGL AS +  +E+NEAFA   L   K LGL     +K+N++GGA+ALGHPLGCSGARI  TLL ++ +K+ ++
Sbjct:  219 LATLRPAFDPVNGTVTAGTSSALSDGAAAMLVMSESRAHELGLKPRARVRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMERKDVQF 367          
The following BLAST results are available for this feature:
BLAST of CB304629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
FADA_ACIBY4.328e-2641.923-ketoacyl-CoA thiolase OS=Acinetobacter baumannii... [more]
FADA_ACIBT4.328e-2641.923-ketoacyl-CoA thiolase OS=Acinetobacter baumannii... [more]
FADA_ACIBS4.328e-2641.923-ketoacyl-CoA thiolase OS=Acinetobacter baumannii... [more]
FADA_ACIBC4.328e-2641.923-ketoacyl-CoA thiolase OS=Acinetobacter baumannii... [more]
FADA_ACIB54.328e-2641.923-ketoacyl-CoA thiolase OS=Acinetobacter baumannii... [more]
FADA_ACIB34.328e-2641.923-ketoacyl-CoA thiolase OS=Acinetobacter baumannii... [more]
PCAF_ACIAD5.653e-2644.05Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. ... [more]
FADA_SHISS5.653e-2643.623-ketoacyl-CoA thiolase OS=Shigella sonnei (strain... [more]
FADA_SHIFL5.653e-2643.623-ketoacyl-CoA thiolase OS=Shigella flexneri GN=fa... [more]
FADA_SHIF85.653e-2643.623-ketoacyl-CoA thiolase OS=Shigella flexneri serot... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_F05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_F05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304629 ID=CB304629; Name=CB304629; organism=Citrus sinensis; type=EST; length=718bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAGCAAAGCCAGCCAGATA
ATTATTATCTTTTTATTGAAGACGAAAGCACATATGAATAAGAAATGGAG
ATACAATTGCACAACACCCCACCCAAATGGGCCATAATTATCCTCCACAA
GAAGGGTGCAACCTCGTTGATAATAATCCGAACAGAAAATGCTTACACAA
GCTCTACAACAAGTGCCGATGCACCTCCTCCTCCGTTGCAAACGCCACCA
ACACCGTATTTCCAGTTTTTCTGCCTAAGTACCCCCAAAAGTGTGACCAA
GATACGAGCTCCGCTGCAGCCCAGAGGATGTCCCAAAGCTACTGCTCCAC
CATGGACATTAACCTTGTCAGGATTTAGTCCAAGCAATTTCTGGTTTGCA
AGGGCGACGACAGCAAAGGCCTCATTTATTTCGTAACAGTCAACTTGAGA
AGCCTCCAAGCCAGCATTTGAAATGGCTTTAGGTATGGCTAGGGCTGGAG
CTGTTGTAAACATCTCTGGTGCCTGAGCAGCATCAGCATATCCTGTGATC
TTGGCGATCACTTGCAAACCCAGCTTAAGTACCTTCTCTCCACTGACTAG
AACTAATGCTGTAGCTCCATCACTTATACTAGAGGCATTGCCAGCCGTAA
CAGTTCCTCCATTCTCCTTGAAACTTGGTCGAAGCTTCCTCAATTTTGCC
GGGTCAAACTTGCCTAAA
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