CB304629

Overview
NameCB304629
Unique NameCB304629
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_SHIBS (3-ketoacyl-CoA thiolase OS=Shigella boydii serotype 4 (strain Sb227) GN=fadA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.653e-26
Identity = 65/149 (43.62%), Postives = 94/149 (63.09%), Query Frame = -2
Query:  256 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLN---PDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 693
            L  LRP+F    GTVTAG +S++SDGA A++++S  +  +LGL+  A++   A     P +    P  A   A+  AGL AS +  +E+NEAFA   L   K LGL     +K+N++GGA+ALGHPLGCSGARI  TLL ++ +K+ ++
Sbjct:  219 LATLRPAFDPVNGTVTAGTSSALSDGAAAMLVMSESRAHELGLKPRARVRSMAVVGCNPSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMERKDVQF 367          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_SHEPC (3-ketoacyl-CoA thiolase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=fadA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.653e-26
Identity = 65/146 (44.52%), Postives = 91/146 (62.33%), Query Frame = -2
Query:  265 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLN---PDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKN 693
            L  LRP F    GTVTAG +S++SDGA+A++++   K   LGL + A+I   A A     +    P  A  KA++ AG+  + +D  E+NEAFA  +L   K LGL     DK+N++GGA+ALGHPLGCSGARI  TL+ ++  K+
Sbjct:  219 LAALRPVFDPVNGTVTAGTSSALSDGASAMLIMEESKARALGLPIRARIRSMAVAGCDAAIMGYGPVPATQKALARAGITVADLDVIELNEAFAAQSLPCVKDLGLADVVDDKINLNGGAIALGHPLGCSGARISTTLINLMEDKD 364          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_SHEB8 (3-ketoacyl-CoA thiolase OS=Shewanella baltica (strain OS185) GN=fadA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.653e-26
Identity = 65/146 (44.52%), Postives = 91/146 (62.33%), Query Frame = -2
Query:  265 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLN---PDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKN 693
            L  LRP F    GTVTAG +S++SDGA+A++++   K   LGL + A+I   A A     +    P  A  KA++ AG+  + +D  E+NEAFA  +L   K LGL     DK+N++GGA+ALGHPLGCSGARI  TL+ ++  K+
Sbjct:  219 LAALRPVFDPVNGTVTAGTSSALSDGASAMLIMEESKARALGLPIRARIRSMAVAGCDAAIMGYGPVPATQKALARAGITVADLDVIELNEAFAAQSLPCVKDLGLADVVDDKINLNGGAIALGHPLGCSGARISTTLINLMEDKD 364          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_SHEB5 (3-ketoacyl-CoA thiolase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=fadA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.653e-26
Identity = 65/146 (44.52%), Postives = 91/146 (62.33%), Query Frame = -2
Query:  265 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLN---PDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKN 693
            L  LRP F    GTVTAG +S++SDGA+A++++   K   LGL + A+I   A A     +    P  A  KA++ AG+  + +D  E+NEAFA  +L   K LGL     DK+N++GGA+ALGHPLGCSGARI  TL+ ++  K+
Sbjct:  219 LAALRPVFDPVNGTVTAGTSSALSDGASAMLIMEESKARALGLPIRARIRSMAVAGCDAAIMGYGPVPATQKALARAGITVADLDVIELNEAFAAQSLPCVKDLGLADVVDDKINLNGGAIALGHPLGCSGARISTTLINLMEDKD 364          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_ENTS8 (3-ketoacyl-CoA thiolase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=fadA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.653e-26
Identity = 64/146 (43.84%), Postives = 93/146 (63.70%), Query Frame = -2
Query:  265 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLN---PDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKN 693
            L +L+P+F    GTVTAG +S++SDGA A++++S  +  +LGL   A+I   A     P +    P  A   A+  AGL AS +D +E+NEAFA   L   K LGL     +K+N++GGA+ALGHPLGCSGARI  TL+ ++ +++
Sbjct:  219 LSQLKPAFDPANGTVTAGTSSALSDGAAAMLVMSESRARELGLTPRARIRSMAVVGCDPSIMGYGPVPASKLALKKAGLTASDIDLFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLINLMERRD 364          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_ECOUT (3-ketoacyl-CoA thiolase OS=Escherichia coli (strain UTI89 / UPEC) GN=fadA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.653e-26
Identity = 65/149 (43.62%), Postives = 93/149 (62.42%), Query Frame = -2
Query:  256 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLN---PDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 693
            L  LRP+F    GTVTAG +S++SDGA A++++S  +  +LGL+  A++   A     P +    P  A   A+  AGL AS +  +E+NEAFA   L   K LGL     +K+N++GGA+ALGHPLGCSGARI  TLL ++  K+ ++
Sbjct:  219 LATLRPAFDPVSGTVTAGTSSALSDGAAAMLVMSESRARELGLKPRARVRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMEHKDVQF 367          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_ECOK1 (3-ketoacyl-CoA thiolase OS=Escherichia coli O1:K1 / APEC GN=fadA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.653e-26
Identity = 65/149 (43.62%), Postives = 93/149 (62.42%), Query Frame = -2
Query:  256 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLN---PDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 693
            L  LRP+F    GTVTAG +S++SDGA A++++S  +  +LGL+  A++   A     P +    P  A   A+  AGL AS +  +E+NEAFA   L   K LGL     +K+N++GGA+ALGHPLGCSGARI  TLL ++  K+ ++
Sbjct:  219 LATLRPAFDPVSGTVTAGTSSALSDGAAAMLVMSESRARELGLKPRARVRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMEHKDVQF 367          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_ECOHS (3-ketoacyl-CoA thiolase OS=Escherichia coli O9:H4 (strain HS) GN=fadA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.653e-26
Identity = 65/149 (43.62%), Postives = 94/149 (63.09%), Query Frame = -2
Query:  256 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLN---PDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 693
            L  LRP+F    GTVTAG +S++SDGA A++++S  +  +LGL+  A++   A     P +    P  A   A+  AGL AS +  +E+NEAFA   L   K LGL     +K+N++GGA+ALGHPLGCSGARI  TLL ++ +K+ ++
Sbjct:  219 LATLRPAFDPVNGTVTAGTSSALSDGAAAMLVMSESRAHELGLKPRARVRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMERKDVQF 367          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: CATF_ACIAD (Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. (strain ADP1) GN=catF PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.653e-26
Identity = 74/168 (44.05%), Postives = 94/168 (55.95%), Query Frame = -2
Query:  196 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPD--KVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVELV 693
            L KL+   K  G +VTAGNAS I+DGA A+++ S E V +  L+  AKI         P +   APA AI K +  A L   Q+D  E+NEAFA  ALA  + LGL  D  +VN +GGA+ALGHPLG SGAR++ T L  L Q   KY             AL++E V
Sbjct:  235 LAKLKGVVKPEG-SVTAGNASGINDGAAAVLIASDEAVAQYQLKARAKIIASTTVGIEPRIMGFAPAPAIKKLLKQANLTLDQMDVIELNEAFAAQALACTRDLGLADDDARVNPNGGAIALGHPLGASGARLVTTALNQLEQSGGKYALCSMCIGVGQGIALIIERV 401          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_SHESA (3-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ANA-3) GN=fadA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.383e-26
Identity = 65/146 (44.52%), Postives = 91/146 (62.33%), Query Frame = -2
Query:  265 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGL---NPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKN 693
            L  LRP F    GTVTAG +S++SDGA+A++++   K   LGL + A+I   A A     +    P  A  KA++ AG+  + +D  E+NEAFA  +L   K LGL     DK+N++GGA+ALGHPLGCSGARI  TL+ ++  K+
Sbjct:  219 LAALRPVFDPANGTVTAGTSSALSDGASAMLVMEESKARALGLPIRARIRSMAVAGCDAAIMGYGPVPATQKALARAGITVNDLDVIELNEAFAAQSLPCVKDLGLLDVVEDKINLNGGAIALGHPLGCSGARISTTLINLMEHKD 364          
The following BLAST results are available for this feature:
BLAST of CB304629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
FADA_SHIBS5.653e-2643.623-ketoacyl-CoA thiolase OS=Shigella boydii serotyp... [more]
FADA_SHEPC5.653e-2644.523-ketoacyl-CoA thiolase OS=Shewanella putrefaciens... [more]
FADA_SHEB85.653e-2644.523-ketoacyl-CoA thiolase OS=Shewanella baltica (str... [more]
FADA_SHEB55.653e-2644.523-ketoacyl-CoA thiolase OS=Shewanella baltica (str... [more]
FADA_ENTS85.653e-2643.843-ketoacyl-CoA thiolase OS=Enterobacter sakazakii ... [more]
FADA_ECOUT5.653e-2643.623-ketoacyl-CoA thiolase OS=Escherichia coli (strai... [more]
FADA_ECOK15.653e-2643.623-ketoacyl-CoA thiolase OS=Escherichia coli O1:K1 ... [more]
FADA_ECOHS5.653e-2643.623-ketoacyl-CoA thiolase OS=Escherichia coli O9:H4 ... [more]
CATF_ACIAD5.653e-2644.05Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. ... [more]
FADA_SHESA7.383e-2644.523-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_F05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_F05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304629 ID=CB304629; Name=CB304629; organism=Citrus sinensis; type=EST; length=718bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAGCAAAGCCAGCCAGATA
ATTATTATCTTTTTATTGAAGACGAAAGCACATATGAATAAGAAATGGAG
ATACAATTGCACAACACCCCACCCAAATGGGCCATAATTATCCTCCACAA
GAAGGGTGCAACCTCGTTGATAATAATCCGAACAGAAAATGCTTACACAA
GCTCTACAACAAGTGCCGATGCACCTCCTCCTCCGTTGCAAACGCCACCA
ACACCGTATTTCCAGTTTTTCTGCCTAAGTACCCCCAAAAGTGTGACCAA
GATACGAGCTCCGCTGCAGCCCAGAGGATGTCCCAAAGCTACTGCTCCAC
CATGGACATTAACCTTGTCAGGATTTAGTCCAAGCAATTTCTGGTTTGCA
AGGGCGACGACAGCAAAGGCCTCATTTATTTCGTAACAGTCAACTTGAGA
AGCCTCCAAGCCAGCATTTGAAATGGCTTTAGGTATGGCTAGGGCTGGAG
CTGTTGTAAACATCTCTGGTGCCTGAGCAGCATCAGCATATCCTGTGATC
TTGGCGATCACTTGCAAACCCAGCTTAAGTACCTTCTCTCCACTGACTAG
AACTAATGCTGTAGCTCCATCACTTATACTAGAGGCATTGCCAGCCGTAA
CAGTTCCTCCATTCTCCTTGAAACTTGGTCGAAGCTTCCTCAATTTTGCC
GGGTCAAACTTGCCTAAA
back to top