CB304629

Overview
NameCB304629
Unique NameCB304629
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13509 contig Csv1_Contig13509:1..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: THIKA_RAT (3-ketoacyl-CoA thiolase A, peroxisomal OS=Rattus norvegicus GN=Acaa1a PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 9.955e-31
Identity = 69/142 (48.59%), Postives = 96/142 (67.61%), Query Frame = -2
Query:  268 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQK 693
            L KL+P+FK+ GG+ TAGN+S +SDGA A++L    K  +LGL ++  +  YA     P++    PA AIP A+  AGL  + +D +EINEAFA  AL   + LG+  +KVN  GGA+ALGHPLGC+GAR +VTLL  L+++
Sbjct:  257 LAKLKPAFKD-GGSTTAGNSSQVSDGAAAVLLARRSKAEELGLPILGVLRSYAVVGVPPDIMGIGPAYAIPAALQKAGLTVNDIDIFEINEAFASQALYCVEKLGIPAEKVNPLGGAIALGHPLGCTGARQVVTLLNELKRR 397          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: THIL_HUMAN (Acetyl-CoA acetyltransferase, mitochondrial OS=Homo sapiens GN=ACAT1 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.300e-30
Identity = 71/170 (41.76%), Postives = 110/170 (64.71%), Query Frame = -2
Query:  202 KFDPAKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVE 711
            + D +K+ KL+  F++  GTVTA NAS+++DGA ALVL++ +   +L +  +A+I  +ADAA  P  F  AP  A    + + GL+   +  +E+NEAF++V LAN K+L ++P KVN++GGAV+LGHP+G SGARI+  L   L+Q   +Y          GASA++++
Sbjct:  258 RVDFSKVPKLKTVFQKENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPIAPVYAASMVLKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGARIVGHLTHALKQ--GEYGLASICNGGGGASAMLIQ 425          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: THIK_HUMAN (3-ketoacyl-CoA thiolase, peroxisomal OS=Homo sapiens GN=ACAA1 PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.300e-30
Identity = 71/142 (50.00%), Postives = 95/142 (66.90%), Query Frame = -2
Query:  268 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQK 693
            L KL+P+FK++G T TAGN+S +SDGA A++L    K  +LGL ++  +  YA     P++    PA AIP A+  AGL  S VD +EINEAFA  A    + L L P+KVN  GGAVALGHPLGC+GAR ++TLL  L+++
Sbjct:  257 LAKLKPAFKKDGST-TAGNSSQVSDGAAAILLARRSKAEELGLPILGVLRSYAVVGVPPDIMGIGPAYAIPVALQKAGLTVSDVDIFEINEAFASQAAYCVEKLRLPPEKVNPLGGAVALGHPLGCTGARQVITLLNELKRR 397          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: THIKB_MOUSE (3-ketoacyl-CoA thiolase B, peroxisomal OS=Mus musculus GN=Acaa1b PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.218e-30
Identity = 68/142 (47.89%), Postives = 96/142 (67.61%), Query Frame = -2
Query:  268 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQK 693
            L KL+P+FK+ GG+ TAGN+S +SDGA A++L    K  +LGL ++  +  YA     P++    PA AIP A+  AGL  + +D +EINEAFA  A+   + LG+  +KVN  GGA+ALGHPLGC+GAR +VTLL  L+++
Sbjct:  257 LAKLKPAFKD-GGSTTAGNSSQVSDGAAAVLLARRSKAEELGLPILGVLRSYAVVGVPPDVMGIGPAYAIPAALQKAGLTVNDIDIFEINEAFASQAVYCVEKLGIPAEKVNPLGGAIALGHPLGCTGARQVVTLLNELKRR 397          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: THIKA_MOUSE (3-ketoacyl-CoA thiolase A, peroxisomal OS=Mus musculus GN=Acaa1a PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.218e-30
Identity = 68/142 (47.89%), Postives = 96/142 (67.61%), Query Frame = -2
Query:  268 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQK 693
            L KL+P+FK+ GG+ TAGN+S +SDGA A++L    K  +LGL ++  +  YA     P++    PA AIP A+  AGL  + +D +EINEAFA  A+   + LG+  +KVN  GGA+ALGHPLGC+GAR +VTLL  L+++
Sbjct:  257 LAKLKPAFKD-GGSTTAGNSSQVSDGAAAVLLARRSKAEELGLPILGVLRSYAVVGVPPDVMGIGPAYAIPAALQKAGLTVNDIDIFEINEAFASQAVYCVEKLGIPAEKVNPLGGAIALGHPLGCTGARQVVTLLNELKRR 397          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_SACD2 (3-ketoacyl-CoA thiolase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=fadA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.218e-30
Identity = 72/146 (49.32%), Postives = 94/146 (64.38%), Query Frame = -2
Query:  265 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQK---LLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKN 693
            L KL+P+F   GGTVTAG +S I+DGA++++++S  K  +LGL  IAKI   A A   P +    P  A  KA++NAGL    +D  E+NEAFA  AL   K   LL    DKVN++GGA+ALGHP GCSG RI  TLL V++ K+
Sbjct:  223 LSKLKPAFNPKGGTVTAGTSSQITDGASSMLVMSAAKAAELGLTPIAKIRSMALAGVDPSIMGYGPVPATQKALANAGLSIEDIDVVELNEAFAAQALPVLKDLNLLDAMEDKVNLYGGAIALGHPFGCSGTRITGTLLSVMQDKD 368          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: THIL_MACFA (Acetyl-CoA acetyltransferase, mitochondrial OS=Macaca fascicularis GN=ACAT1 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.896e-30
Identity = 70/170 (41.18%), Postives = 110/170 (64.71%), Query Frame = -2
Query:  202 KFDPAKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVE 711
            + D +K+ KL+  F++  GT+TA NAS+++DGA ALVL++     +L +  +A+I  +ADAA  P  F  AP  A+   + + GL+   +  +E+NEAF++V LAN K+L ++P KVN++GGAV+LGHP+G SGARI+  L   L+Q   +Y          GASA++++
Sbjct:  258 RVDFSKVPKLKTVFQKENGTITAANASTLNDGAAALVLMTAGAAKRLNVTPLARIVAFADAAVEPIDFPIAPVHAVSMVLKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGARIVGHLTHALKQ--GEYGLASICNGGGGASAMLIQ 425          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: THLA_STAAW (Probable acetyl-CoA acyltransferase OS=Staphylococcus aureus (strain MW2) GN=MW0330 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.783e-30
Identity = 68/143 (47.55%), Postives = 98/143 (68.53%), Query Frame = -2
Query:  268 KLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQK 696
            KL +LRP+FK++G TVTAGNAS I+DGA  ++++S +K  +L ++ +A + G+      P +   AP  A+ KA+  +  E S +D +E+NEAFA  +LA  + L L P+KVNV GGA+ALGHP+G SGAR+LVTLL  L  +
Sbjct:  228 KLSRLRPAFKKDG-TVTAGNASGINDGAAMMLVMSEDKAKELNIEPLAVLDGFGSHGVDPSIMGIAPVGAVEKALKRSKKELSDIDVFELNEAFAAQSLAVDRELKLPPEKVNVKGGAIALGHPIGASGARVLVTLLHQLNDE 369          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: THLA_STAAS (Probable acetyl-CoA acyltransferase OS=Staphylococcus aureus (strain MSSA476) GN=SAS0330 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.783e-30
Identity = 68/143 (47.55%), Postives = 98/143 (68.53%), Query Frame = -2
Query:  268 KLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQK 696
            KL +LRP+FK++G TVTAGNAS I+DGA  ++++S +K  +L ++ +A + G+      P +   AP  A+ KA+  +  E S +D +E+NEAFA  +LA  + L L P+KVNV GGA+ALGHP+G SGAR+LVTLL  L  +
Sbjct:  228 KLSRLRPAFKKDG-TVTAGNASGINDGAAMMLVMSEDKAKELNIEPLAVLDGFGSHGVDPSIMGIAPVGAVEKALKRSKKELSDIDVFELNEAFAAQSLAVDRELKLPPEKVNVKGGAIALGHPIGASGARVLVTLLHQLNDE 369          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: THLA_STAAC (Probable acetyl-CoA acyltransferase OS=Staphylococcus aureus (strain COL) GN=SACOL0426 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.783e-30
Identity = 68/143 (47.55%), Postives = 98/143 (68.53%), Query Frame = -2
Query:  268 KLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQK 696
            KL +LRP+FK++G TVTAGNAS I+DGA  ++++S +K  +L ++ +A + G+      P +   AP  A+ KA+  +  E S +D +E+NEAFA  +LA  + L L P+KVNV GGA+ALGHP+G SGAR+LVTLL  L  +
Sbjct:  228 KLSRLRPAFKKDG-TVTAGNASGINDGAAMMLVMSEDKAKELNIEPLAVLDGFGSHGVDPSIMGIAPVGAVEKALKRSKKELSDIDVFELNEAFAAQSLAVDRELKLPPEKVNVKGGAIALGHPIGASGARVLVTLLHQLNDE 369          
The following BLAST results are available for this feature:
BLAST of CB304629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
THIKA_RAT9.955e-3148.593-ketoacyl-CoA thiolase A, peroxisomal OS=Rattus n... [more]
THIL_HUMAN1.300e-3041.76Acetyl-CoA acetyltransferase, mitochondrial OS=Hom... [more]
THIK_HUMAN1.300e-3050.003-ketoacyl-CoA thiolase, peroxisomal OS=Homo sapie... [more]
THIKB_MOUSE2.218e-3047.893-ketoacyl-CoA thiolase B, peroxisomal OS=Mus musc... [more]
THIKA_MOUSE2.218e-3047.893-ketoacyl-CoA thiolase A, peroxisomal OS=Mus musc... [more]
FADA_SACD22.218e-3049.323-ketoacyl-CoA thiolase OS=Saccharophagus degradan... [more]
THIL_MACFA2.896e-3041.18Acetyl-CoA acetyltransferase, mitochondrial OS=Mac... [more]
THLA_STAAW3.783e-3047.55Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
THLA_STAAS3.783e-3047.55Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
THLA_STAAC3.783e-3047.55Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_F05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_F05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304629 ID=CB304629; Name=CB304629; organism=Citrus sinensis; type=EST; length=718bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAGCAAAGCCAGCCAGATA
ATTATTATCTTTTTATTGAAGACGAAAGCACATATGAATAAGAAATGGAG
ATACAATTGCACAACACCCCACCCAAATGGGCCATAATTATCCTCCACAA
GAAGGGTGCAACCTCGTTGATAATAATCCGAACAGAAAATGCTTACACAA
GCTCTACAACAAGTGCCGATGCACCTCCTCCTCCGTTGCAAACGCCACCA
ACACCGTATTTCCAGTTTTTCTGCCTAAGTACCCCCAAAAGTGTGACCAA
GATACGAGCTCCGCTGCAGCCCAGAGGATGTCCCAAAGCTACTGCTCCAC
CATGGACATTAACCTTGTCAGGATTTAGTCCAAGCAATTTCTGGTTTGCA
AGGGCGACGACAGCAAAGGCCTCATTTATTTCGTAACAGTCAACTTGAGA
AGCCTCCAAGCCAGCATTTGAAATGGCTTTAGGTATGGCTAGGGCTGGAG
CTGTTGTAAACATCTCTGGTGCCTGAGCAGCATCAGCATATCCTGTGATC
TTGGCGATCACTTGCAAACCCAGCTTAAGTACCTTCTCTCCACTGACTAG
AACTAATGCTGTAGCTCCATCACTTATACTAGAGGCATTGCCAGCCGTAA
CAGTTCCTCCATTCTCCTTGAAACTTGGTCGAAGCTTCCTCAATTTTGCC
GGGTCAAACTTGCCTAAA
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