CB304629

Overview
NameCB304629
Unique NameCB304629
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_PSEHT (3-ketoacyl-CoA thiolase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=fadI PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.693e-19
Identity = 55/158 (34.81%), Postives = 85/158 (53.80%), Query Frame = -2 
Query:  268 KLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEM-FTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQK 687
            KL+P F    GTVTA NA+ ++DGA A++++S  K   LG +++  +  +A +A   E      PA A P A+  AG+  + +D  E++EAFA   LAN K+                   +N DK NV GG++A GHP   +GAR++   L  L+++
Sbjct:  255 KLKPVFDRQHGTVTAANATPLTDGAAAVLMMSESKAKALGYEILGYVRSFAFSAIGVEKDMLMGPAHATPIALDRAGITLADLDLIEMHEAFASQTLANMKMFASDKFAQEHLGRSKAIGEINMDKFNVLGGSLAYGHPFAATGARLITQSLYELKRR 412
[Close]
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_SALTI (3-ketoacyl-CoA thiolase OS=Salmonella typhi GN=fadI PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.741e-19
Identity = 57/184 (30.98%), Postives = 95/184 (51.63%), Query Frame = -2 
Query:  202 AKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVE 699
            A   KLRP+F    G+VTA N++ ++DGA A++L++  +  +LGL+ +  +  YA  A    +     PA + P A+  AGL  + +  ++++EAFA   LAN +LLG                 ++  K NV GG++A GHP   +GAR++   L  LR++   +            +A+V+E
Sbjct:  251 ADYAKLRPAFDRKHGSVTAANSTPLTDGAAAVILMTESRAKELGLRPLGYLRSYAFTAIDVWQDMLLGPAWSTPLALERAGLTMADLTLFDMHEAFAAQTLANLQLLGSERFAREVFGRAQATGEVDDAKFNVLGGSIAYGHPFAATGARMITQTLHELRRRGGGFGLVTACAAGGLGAAMVLE 434
[Close]
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_SALPC (3-ketoacyl-CoA thiolase OS=Salmonella paratyphi C (strain RKS4594) GN=fadI PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.741e-19
Identity = 57/184 (30.98%), Postives = 95/184 (51.63%), Query Frame = -2 
Query:  202 AKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVE 699
            A   KLRP+F    G+VTA N++ ++DGA A++L++  +  +LGL+ +  +  YA  A    +     PA + P A+  AGL  + +  ++++EAFA   LAN +LLG                 ++  K NV GG++A GHP   +GAR++   L  LR++   +            +A+V+E
Sbjct:  251 ADYAKLRPAFDRKHGSVTAANSTPLTDGAAAVILMTESRAKELGLRPLGYLRSYAFTAIDVWQDMLLGPAWSTPLALERAGLTMADLTLFDMHEAFAAQTLANLQLLGSERFAREVLGRAQATGEVDDAKFNVLGGSIAYGHPFAATGARMITQTLHELRRRGGGFGLVTACAAGGLGAAMVLE 434
[Close]
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_SALHS (3-ketoacyl-CoA thiolase OS=Salmonella heidelberg (strain SL476) GN=fadI PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.741e-19
Identity = 57/184 (30.98%), Postives = 95/184 (51.63%), Query Frame = -2 
Query:  202 AKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVE 699
            A   KLRP+F    G+VTA N++ ++DGA A++L++  +  +LGL+ +  +  YA  A    +     PA + P A+  AGL  + +  ++++EAFA   LAN +LLG                 ++  K NV GG++A GHP   +GAR++   L  LR++   +            +A+V+E
Sbjct:  251 ADYAKLRPAFDRKHGSVTAANSTPLTDGAAAVILMTESRAKELGLRPLGYLRSYAFTAIDVWQDMLLGPAWSTPLALERAGLTMADLTLFDMHEAFAAQTLANLQLLGSERFACEVLGRAQATGEVDDAKFNVLGGSIAYGHPFAATGARMITQTLHELRRRGGGFGLVTACAAGGLGAAMVLE 434
[Close]
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_SALCH (3-ketoacyl-CoA thiolase OS=Salmonella choleraesuis GN=fadI PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.741e-19
Identity = 57/184 (30.98%), Postives = 95/184 (51.63%), Query Frame = -2 
Query:  202 AKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVE 699
            A   KLRP+F    G+VTA N++ ++DGA A++L++  +  +LGL+ +  +  YA  A    +     PA + P A+  AGL  + +  ++++EAFA   LAN +LLG                 ++  K NV GG++A GHP   +GAR++   L  LR++   +            +A+V+E
Sbjct:  251 ADYAKLRPAFDRKHGSVTAANSTPLTDGAAAVILMTESRAKELGLRPLGYLRSYAFTAIDVWQDMLLGPAWSTPLALERAGLTMADLTLFDMHEAFAAQTLANLQLLGSERFAREVLGRAQATGEVDDAKFNVLGGSIAYGHPFAATGARMITQTLHELRRRGGGFGLVTACAAGGLGAAMVLE 434
[Close]
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_ECO5E (3-ketoacyl-CoA thiolase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=fadI PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.741e-19
Identity = 59/189 (31.22%), Postives = 94/189 (49.74%), Query Frame = -2 
Query:  202 GKFDPAKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVE 714
            G    A   KLRP+F    GTVTA N++ ++DGA A++L++  +  +LGL  +  +  YA  A    +     PA + P A+  AGL  + +   +++EAFA   LAN +LLG                 ++  K NV GG++A GHP   +GAR++   L  LR++   +            +A+V+E
Sbjct:  246 GNSSLADFAKLRPAFDRKHGTVTAANSTPLTDGAAAVILMTESRAKELGLVPLGYLRSYAFTAIDVWQDMLLGPAWSTPLALERAGLTMADLTLIDMHEAFAAQTLANIQLLGSERFAREALGRAHATGEVDDSKFNVLGGSIAYGHPFAATGARMITQTLHELRRRGGGFGLVTACAAGGLGAAMVLE 434
[Close]
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_ECO57 (3-ketoacyl-CoA thiolase OS=Escherichia coli O157:H7 GN=fadI PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.741e-19
Identity = 59/189 (31.22%), Postives = 94/189 (49.74%), Query Frame = -2 
Query:  202 GKFDPAKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVE 714
            G    A   KLRP+F    GTVTA N++ ++DGA A++L++  +  +LGL  +  +  YA  A    +     PA + P A+  AGL  + +   +++EAFA   LAN +LLG                 ++  K NV GG++A GHP   +GAR++   L  LR++   +            +A+V+E
Sbjct:  246 GNSSLADFAKLRPAFDRKHGTVTAANSTPLTDGAAAVILMTESRAKELGLVPLGYLRSYAFTAIDVWQDMLLGPAWSTPLALERAGLTMADLTLIDMHEAFAAQTLANIQLLGSERFAREALGRAHATGEVDDSKFNVLGGSIAYGHPFAATGARMITQTLHELRRRGGGFGLVTACAAGGLGAAMVLE 434
[Close]
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_CITK8 (3-ketoacyl-CoA thiolase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=fadI PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.741e-19
Identity = 58/184 (31.52%), Postives = 93/184 (50.54%), Query Frame = -2 
Query:  202 AKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVE 699
            A   KLRP+F    GTVTA N++ ++DGA A++L++  +  +LGL  +  +  YA  A    +     PA + P A+  AGL  + +   +++EAFA   LAN +LLG                 ++  K NV GG++A GHP   +GAR++   L  LR++   +            +A+V+E
Sbjct:  251 ADYAKLRPAFDRQHGTVTAANSTPLTDGAAAVILMTESRAKELGLAPLGYLRSYAFTAIDVWQDMLLGPAWSTPLALERAGLTLADLSLIDMHEAFAAQTLANIQLLGSERFARDVLGRAHATGEVDDSKFNVLGGSIAYGHPFAATGARMITQTLHELRRRGGGFGLVTACAAGGLGAAMVLE 434
[Close]
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_SALSV (3-ketoacyl-CoA thiolase OS=Salmonella schwarzengrund (strain CVM19633) GN=fadI PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.142e-18
Identity = 57/184 (30.98%), Postives = 94/184 (51.09%), Query Frame = -2 
Query:  202 AKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVE 699
            A   KLRP+F    G+VTA N++ ++DGA A++L++  +  +LGL  +  +  YA  A    +     PA + P A+  AGL  + +  ++++EAFA   LAN +LLG                 ++  K NV GG++A GHP   +GAR++   L  LR++   +            +A+V+E
Sbjct:  251 ADYAKLRPAFDRKHGSVTAANSTPLTDGAAAVILMTESRAKELGLHPLGYLRSYAFTAIDVWQDMLLGPAWSTPLALERAGLTMADLTLFDMHEAFAAQTLANLQLLGSERFAREVLGRAQATGEVDDAKFNVLGGSIAYGHPFAATGARMITQTLHELRRRGGGFGLVTACAAGGLGAAMVLE 434
[Close]
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_SALPK (3-ketoacyl-CoA thiolase OS=Salmonella paratyphi A (strain AKU_12601) GN=fadI PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.142e-18
Identity = 57/184 (30.98%), Postives = 94/184 (51.09%), Query Frame = -2 
Query:  202 AKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVE 699
            A   KLRP+F    G+VTA N++ ++DGA A++L++  +  +LGL  +  +  YA  A    +     PA + P A+  AGL  + +  ++++EAFA   LAN +LLG                 ++  K NV GG++A GHP   +GAR++   L  LR++   +            +A+V+E
Sbjct:  251 ADYAKLRPAFDRKHGSVTAANSTPLTDGAAAVILMTESRAKELGLHPLGYLRSYAFTAIDVWQDMLLGPAWSTPLALERAGLTMADLTLFDMHEAFAAQTLANLQLLGSERFAREVLGRAQATGEVDDAKFNVLGGSIAYGHPFAATGARMITQTLHELRRRGGGFGLVTACAAGGLGAAMVLE 434
The following BLAST results are available for this feature:
BLAST of CB304629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
FADI_PSEHT6.693e-1934.813-ketoacyl-CoA thiolase OS=Pseudoalteromonas halop... [more]
FADI_SALTI8.741e-1930.983-ketoacyl-CoA thiolase OS=Salmonella typhi GN=fad... [more]
FADI_SALPC8.741e-1930.983-ketoacyl-CoA thiolase OS=Salmonella paratyphi C ... [more]
FADI_SALHS8.741e-1930.983-ketoacyl-CoA thiolase OS=Salmonella heidelberg (... [more]
FADI_SALCH8.741e-1930.983-ketoacyl-CoA thiolase OS=Salmonella choleraesuis... [more]
FADI_ECO5E8.741e-1931.223-ketoacyl-CoA thiolase OS=Escherichia coli O157:H... [more]
FADI_ECO578.741e-1931.223-ketoacyl-CoA thiolase OS=Escherichia coli O157:H... [more]
FADI_CITK88.741e-1931.523-ketoacyl-CoA thiolase OS=Citrobacter koseri (str... [more]
FADI_SALSV1.142e-1830.983-ketoacyl-CoA thiolase OS=Salmonella schwarzengru... [more]
FADI_SALPK1.142e-1830.983-ketoacyl-CoA thiolase OS=Salmonella paratyphi A ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_F05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_F05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304629 ID=CB304629; Name=CB304629; organism=Citrus sinensis; type=EST; length=718bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAGCAAAGCCAGCCAGATA
ATTATTATCTTTTTATTGAAGACGAAAGCACATATGAATAAGAAATGGAG
ATACAATTGCACAACACCCCACCCAAATGGGCCATAATTATCCTCCACAA
GAAGGGTGCAACCTCGTTGATAATAATCCGAACAGAAAATGCTTACACAA
GCTCTACAACAAGTGCCGATGCACCTCCTCCTCCGTTGCAAACGCCACCA
ACACCGTATTTCCAGTTTTTCTGCCTAAGTACCCCCAAAAGTGTGACCAA
GATACGAGCTCCGCTGCAGCCCAGAGGATGTCCCAAAGCTACTGCTCCAC
CATGGACATTAACCTTGTCAGGATTTAGTCCAAGCAATTTCTGGTTTGCA
AGGGCGACGACAGCAAAGGCCTCATTTATTTCGTAACAGTCAACTTGAGA
AGCCTCCAAGCCAGCATTTGAAATGGCTTTAGGTATGGCTAGGGCTGGAG
CTGTTGTAAACATCTCTGGTGCCTGAGCAGCATCAGCATATCCTGTGATC
TTGGCGATCACTTGCAAACCCAGCTTAAGTACCTTCTCTCCACTGACTAG
AACTAATGCTGTAGCTCCATCACTTATACTAGAGGCATTGCCAGCCGTAA
CAGTTCCTCCATTCTCCTTGAAACTTGGTCGAAGCTTCCTCAATTTTGCC
GGGTCAAACTTGCCTAAA
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