CB304629

Overview
NameCB304629
Unique NameCB304629
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_SALPA (3-ketoacyl-CoA thiolase OS=Salmonella paratyphi A GN=fadI PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.142e-18
Identity = 57/184 (30.98%), Postives = 94/184 (51.09%), Query Frame = -2
Query:  202 AKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVE 699
            A   KLRP+F    G+VTA N++ ++DGA A++L++  +  +LGL  +  +  YA  A    +     PA + P A+  AGL  + +  ++++EAFA   LAN +LLG                 ++  K NV GG++A GHP   +GAR++   L  LR++   +            +A+V+E
Sbjct:  251 ADYAKLRPAFDRKHGSVTAANSTPLTDGAAAVILMTESRAKELGLHPLGYLRSYAFTAIDVWQDMLLGPAWSTPLALERAGLTMADLTLFDMHEAFAAQTLANLQLLGSERFAREVLGRAQATGEVDDAKFNVLGGSIAYGHPFAATGARMITQTLHELRRRGGGFGLVTACAAGGLGAAMVLE 434          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_SALNS (3-ketoacyl-CoA thiolase OS=Salmonella newport (strain SL254) GN=fadI PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.142e-18
Identity = 57/184 (30.98%), Postives = 94/184 (51.09%), Query Frame = -2
Query:  202 AKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVE 699
            A   KLRP+F    G+VTA N++ ++DGA A++L++  +  +LGL  +  +  YA  A    +     PA + P A+  AGL  + +  ++++EAFA   LAN +LLG                 ++  K NV GG++A GHP   +GAR++   L  LR++   +            +A+V+E
Sbjct:  251 ADYAKLRPAFDRKHGSVTAANSTPLTDGAAAVILMTESRAKELGLHPLGYLRSYAFTAIDVWQDMLLGPAWSTPLALERAGLTMADLTLFDMHEAFAAQTLANLQLLGSERFAREVLGRAQATGEVDDAKFNVLGGSIAYGHPFAATGARMITQTLHELRRRGGGFGLVTACAAGGLGAAMVLE 434          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_SHEAM (3-ketoacyl-CoA thiolase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=fadI PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.491e-18
Identity = 59/187 (31.55%), Postives = 92/187 (49.20%), Query Frame = -2
Query:  199 DPAKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAA-QAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVEL 705
            D A   KLRP F    G+VTA N++ ++DGA+AL+L+S  +   LG   I  I  YA AA    E     P+ A P A+  AG++   +   E++EAFA  ALAN K+                   ++  K NV GG++A GHP   +GAR++  +   L+++                +A+++E+
Sbjct:  249 DLASYAKLRPVFDRKHGSVTAANSTPLTDGASALLLMSEGRAKALGYTPIGYIKSYAFAAIDVWEDMLMGPSYATPMALKRAGMQLEDLTLIEMHEAFAAQALANMKMFASKKFAEEKLGQNRAIGEIDMSKFNVLGGSLAYGHPFAATGARLITQMCNELKRRGGGVGLTTACAAGGLGAAMILEV 435          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_SALTY (3-ketoacyl-CoA thiolase OS=Salmonella typhimurium GN=fadI PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.491e-18
Identity = 57/184 (30.98%), Postives = 95/184 (51.63%), Query Frame = -2
Query:  202 AKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVE 699
            A   KLRP+F    G+VTA N++ ++DGA A++L++  +  +LGL+ +  +  YA  A    +     PA + P A+  AGL  + +  ++++EAFA   LAN +LLG                 ++  K NV GG++A GHP   +GAR++   L  LR++   +            +A+V+E
Sbjct:  251 ADYAKLRPAFDRKHGSVTAANSTPLTDGAAAVILMTESRAKELGLRPLGYLRTYAFTAIDVWQDMLLGPAWSTPLALERAGLTMADLTLFDMHEAFAAQTLANLQLLGSERFAREVLGCAQATGEVDDAKFNVLGGSIAYGHPFAATGARMITQTLHELRRRGGGFGLVTACAAGGLGAAMVLE 434          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_SALPB (3-ketoacyl-CoA thiolase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=fadI PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.491e-18
Identity = 56/184 (30.43%), Postives = 95/184 (51.63%), Query Frame = -2
Query:  202 AKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVE 699
            A   KLRP+F    G+VTA N++ ++DGA A+++++  +  +LGL+ +  +  YA  A    +     PA + P A+  AGL  + +  ++++EAFA   LAN +LLG                 ++  K NV GG++A GHP   +GAR++   L  LR++   +            +A+V+E
Sbjct:  251 ADYAKLRPAFDRKHGSVTAANSTPLTDGAAAVIMMTESRAKELGLRPLGYLRSYAFTAIDVWQDMLLGPAWSTPLALERAGLTMADLTLFDMHEAFAAQTLANLQLLGSERFAREVLGRAQATGEVDDAKFNVLGGSIAYGHPFAATGARMITQTLHELRRRGGGFGLVTACAAGGLGAAMVLE 434          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_SALEP (3-ketoacyl-CoA thiolase OS=Salmonella enteritidis PT4 (strain P125109) GN=fadI PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.491e-18
Identity = 56/184 (30.43%), Postives = 95/184 (51.63%), Query Frame = -2
Query:  202 AKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVE 699
            A   KLRP+F    G+VTA N++ ++DGA A+++++  +  +LGL+ +  +  YA  A    +     PA + P A+  AGL  + +  ++++EAFA   LAN +LLG                 ++  K NV GG++A GHP   +GAR++   L  LR++   +            +A+V+E
Sbjct:  251 ADYAKLRPAFDRKHGSVTAANSTPLTDGAAAVIMMTESRAKELGLRPLGYLRSYAFTAIDVWQDMLLGPAWSTPLALERAGLTMADLTLFDMHEAFAAQTLANLQLLGSERFAREVLGRAQATGEVDDAKFNVLGGSIAYGHPFAATGARMITQTLHELRRRGGGFGLVTACAAGGLGAAMVLE 434          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_SALDC (3-ketoacyl-CoA thiolase OS=Salmonella dublin (strain CT_02021853) GN=fadI PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.491e-18
Identity = 56/184 (30.43%), Postives = 95/184 (51.63%), Query Frame = -2
Query:  202 AKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVE 699
            A   KLRP+F    G+VTA N++ ++DGA A+++++  +  +LGL+ +  +  YA  A    +     PA + P A+  AGL  + +  ++++EAFA   LAN +LLG                 ++  K NV GG++A GHP   +GAR++   L  LR++   +            +A+V+E
Sbjct:  251 ADYAKLRPAFDRKHGSVTAANSTPLTDGAAAVIMMTESRAKELGLRPLGYLRSYAFTAIDVWQDMLLGPAWSTPLALERAGLTMADLTLFDMHEAFAAQTLANLQLLGSERFAREVLGRAQATGEVDDAKFNVLGGSIAYGHPFAATGARMITQTLHELRRRGGGFGLVTACAAGGLGAAMVLE 434          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_SALA4 (3-ketoacyl-CoA thiolase OS=Salmonella agona (strain SL483) GN=fadI PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.491e-18
Identity = 56/184 (30.43%), Postives = 95/184 (51.63%), Query Frame = -2
Query:  202 AKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVE 699
            A   KLRP+F    G+VTA N++ ++DGA A+++++  +  +LGL+ +  +  YA  A    +     PA + P A+  AGL  + +  ++++EAFA   LAN +LLG                 ++  K NV GG++A GHP   +GAR++   L  LR++   +            +A+V+E
Sbjct:  251 ADYAKLRPAFDRKHGSVTAANSTPLTDGAAAVIMMTESRAKELGLRPLGYLRSYAFTAIDVWQDMLLGPAWSTPLALERAGLTMADLTLFDMHEAFAAQTLANLQLLGSERFAREVLGRAQATGEVDDAKFNVLGGSIAYGHPFAATGARMITQTLHELRRRGGGFGLVTACAAGGLGAAMVLE 434          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_ECOUT (3-ketoacyl-CoA thiolase OS=Escherichia coli (strain UTI89 / UPEC) GN=fadI PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.491e-18
Identity = 59/189 (31.22%), Postives = 93/189 (49.21%), Query Frame = -2
Query:  202 GKFDPAKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVE 714
            G    A   KLRP+F    GTVTA N++ ++DGA A++L++  +  +LGL  +  +  YA  A    +     PA + P A+  AGL    +   +++EAFA   LAN +LLG                 ++  K NV GG++A GHP   +GAR++   L  LR++   +            +A+V+E
Sbjct:  246 GNSSLADYAKLRPAFDRKHGTVTAANSTPLTDGAAAVILMTESRAKELGLVPLGYLRSYAFTAIDVWQDMLLGPAWSTPLALERAGLTMGDLTLIDMHEAFAAQTLANIQLLGSERFARDVLGRAHATGEVDESKFNVLGGSIAYGHPFAATGARMITQTLHELRRRGGGFGLVTACAAGGLGAAMVLE 434          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_ECOL5 (3-ketoacyl-CoA thiolase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=fadI PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.491e-18
Identity = 59/189 (31.22%), Postives = 93/189 (49.21%), Query Frame = -2
Query:  202 GKFDPAKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVE 714
            G    A   KLRP+F    GTVTA N++ ++DGA A++L++  +  +LGL  +  +  YA  A    +     PA + P A+  AGL    +   +++EAFA   LAN +LLG                 ++  K NV GG++A GHP   +GAR++   L  LR++   +            +A+V+E
Sbjct:  246 GNSSLADYAKLRPAFDRKHGTVTAANSTPLTDGAAAVILMTESRAKELGLVPLGYLRSYAFTAIDVWQDMLLGPAWSTPLALERAGLTMGDLTLIDMHEAFAAQTLANIQLLGSERFARDVLGRAHATGEVDESKFNVLGGSIAYGHPFAATGARMITQTLHELRRRGGGFGLVTACAAGGLGAAMVLE 434          
The following BLAST results are available for this feature:
BLAST of CB304629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
FADI_SALPA1.142e-1830.983-ketoacyl-CoA thiolase OS=Salmonella paratyphi A ... [more]
FADI_SALNS1.142e-1830.983-ketoacyl-CoA thiolase OS=Salmonella newport (str... [more]
FADI_SHEAM1.491e-1831.553-ketoacyl-CoA thiolase OS=Shewanella amazonensis ... [more]
FADI_SALTY1.491e-1830.983-ketoacyl-CoA thiolase OS=Salmonella typhimurium ... [more]
FADI_SALPB1.491e-1830.433-ketoacyl-CoA thiolase OS=Salmonella paratyphi B ... [more]
FADI_SALEP1.491e-1830.433-ketoacyl-CoA thiolase OS=Salmonella enteritidis ... [more]
FADI_SALDC1.491e-1830.433-ketoacyl-CoA thiolase OS=Salmonella dublin (stra... [more]
FADI_SALA41.491e-1830.433-ketoacyl-CoA thiolase OS=Salmonella agona (strai... [more]
FADI_ECOUT1.491e-1831.223-ketoacyl-CoA thiolase OS=Escherichia coli (strai... [more]
FADI_ECOL51.491e-1831.223-ketoacyl-CoA thiolase OS=Escherichia coli O6:K15... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_F05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_F05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304629 ID=CB304629; Name=CB304629; organism=Citrus sinensis; type=EST; length=718bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAGCAAAGCCAGCCAGATA
ATTATTATCTTTTTATTGAAGACGAAAGCACATATGAATAAGAAATGGAG
ATACAATTGCACAACACCCCACCCAAATGGGCCATAATTATCCTCCACAA
GAAGGGTGCAACCTCGTTGATAATAATCCGAACAGAAAATGCTTACACAA
GCTCTACAACAAGTGCCGATGCACCTCCTCCTCCGTTGCAAACGCCACCA
ACACCGTATTTCCAGTTTTTCTGCCTAAGTACCCCCAAAAGTGTGACCAA
GATACGAGCTCCGCTGCAGCCCAGAGGATGTCCCAAAGCTACTGCTCCAC
CATGGACATTAACCTTGTCAGGATTTAGTCCAAGCAATTTCTGGTTTGCA
AGGGCGACGACAGCAAAGGCCTCATTTATTTCGTAACAGTCAACTTGAGA
AGCCTCCAAGCCAGCATTTGAAATGGCTTTAGGTATGGCTAGGGCTGGAG
CTGTTGTAAACATCTCTGGTGCCTGAGCAGCATCAGCATATCCTGTGATC
TTGGCGATCACTTGCAAACCCAGCTTAAGTACCTTCTCTCCACTGACTAG
AACTAATGCTGTAGCTCCATCACTTATACTAGAGGCATTGCCAGCCGTAA
CAGTTCCTCCATTCTCCTTGAAACTTGGTCGAAGCTTCCTCAATTTTGCC
GGGTCAAACTTGCCTAAA
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