CB304629

Overview
NameCB304629
Unique NameCB304629
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_ECOK1 (3-ketoacyl-CoA thiolase OS=Escherichia coli O1:K1 / APEC GN=fadI PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.491e-18
Identity = 59/189 (31.22%), Postives = 93/189 (49.21%), Query Frame = -2
Query:  202 GKFDPAKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVE 714
            G    A   KLRP+F    GTVTA N++ ++DGA A++L++  +  +LGL  +  +  YA  A    +     PA + P A+  AGL    +   +++EAFA   LAN +LLG                 ++  K NV GG++A GHP   +GAR++   L  LR++   +            +A+V+E
Sbjct:  246 GNSSLADYAKLRPAFDRKHGTVTAANSTPLTDGAAAVILMTESRAKELGLVPLGYLRSYAFTAIDVWQDMLLGPAWSTPLALERAGLTMGDLTLIDMHEAFAAQTLANIQLLGSERFARDVLGRAHATGEVDESKFNVLGGSIAYGHPFAATGARMITQTLHELRRRGGGFGLVTACAAGGLGAAMVLE 434          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_ECO45 (3-ketoacyl-CoA thiolase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=fadI PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.491e-18
Identity = 59/189 (31.22%), Postives = 93/189 (49.21%), Query Frame = -2
Query:  202 GKFDPAKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVE 714
            G    A   KLRP+F    GTVTA N++ ++DGA A++L++  +  +LGL  +  +  YA  A    +     PA + P A+  AGL    +   +++EAFA   LAN +LLG                 ++  K NV GG++A GHP   +GAR++   L  LR++   +            +A+V+E
Sbjct:  246 GNSSLADYAKLRPAFDRKHGTVTAANSTPLTDGAAAVILMTESRAKELGLVPLGYLRSYAFTAIDVWQDMLLGPAWSTPLALERAGLTMGDLTLIDMHEAFAAQTLANIQLLGSERFARDVLGRAHATGEVDESKFNVLGGSIAYGHPFAATGARMITQTLHELRRRGGGFGLVTACAAGGLGAAMVLE 434          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_VIBVY (3-ketoacyl-CoA thiolase OS=Vibrio vulnificus (strain YJ016) GN=fadI PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.947e-18
Identity = 55/181 (30.39%), Postives = 94/181 (51.93%), Query Frame = -2
Query:  199 KLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEM-FTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVEL 687
            KLRP+F    G+VTA N++ ++DGA A++L+   +  +LG++++  I GYA +A   E      P+ A  K + + GL  S +   +++EAFA  ALAN K+                   ++ DK NV GG++A GHP   +GAR++   L  L+++                +A+++E+
Sbjct:  254 KLRPAFDRQYGSVTAANSTPLTDGAAAVLLMREGRAKELGMEILGYIRGYAFSAIGVESDMLMGPSYATSKVLQSTGLALSDLTLIDMHEAFAAQALANVKMFASDKFAQENLGRSKAMGEIDMDKFNVLGGSIAYGHPFAATGARMMTQTLRELKRRGGGLALNTACAAGGLGAAMILEV 434          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_VIBVU (3-ketoacyl-CoA thiolase OS=Vibrio vulnificus GN=fadI PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.947e-18
Identity = 55/181 (30.39%), Postives = 94/181 (51.93%), Query Frame = -2
Query:  199 KLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEM-FTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVEL 687
            KLRP+F    G+VTA N++ ++DGA A++L+   +  +LG++++  I GYA +A   E      P+ A  K + + GL  S +   +++EAFA  ALAN K+                   ++ DK NV GG++A GHP   +GAR++   L  L+++                +A+++E+
Sbjct:  254 KLRPAFDRQYGSVTAANSTPLTDGAAAVLLMREGRAKELGMEILGYIRGYAFSAIGVESDMLMGPSYATSKVLQSTGLALSDLTLIDMHEAFAAQALANVKMFASDKFAQENLGRSKAMGEIDMDKFNVLGGSIAYGHPFAATGARMMTQTLRELKRRGGGLALNTACAAGGLGAAMILEV 434          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_ECO81 (3-ketoacyl-CoA thiolase OS=Escherichia coli O81 (strain ED1a) GN=fadI PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.947e-18
Identity = 59/189 (31.22%), Postives = 93/189 (49.21%), Query Frame = -2
Query:  202 GKFDPAKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVE 714
            G    A   KLRP+F    GTVTA N++ ++DGA A++L++  +  +LGL  +  +  YA  A    +     PA + P A+  AGL    +   +++EAFA   LAN +LLG                 ++  K NV GG++A GHP   +GAR++   L  LR++   +            +A+V+E
Sbjct:  246 GNSSLADYAKLRPAFDRKHGTVTAANSTPLTDGAAAVILMTESRAKELGLVPLGYLRSYAFTAIDVWQDMLLGPAWSTPLALERAGLTMGDLTLIDMHEAFAAQTLANIQLLGSERFARDVLGRAHATGEVDESKFNVLGGSIAYGHPFAATGARMITQTLYELRRRGGGFGLVTACAAGGLGAAMVLE 434          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_ECO55 (3-ketoacyl-CoA thiolase OS=Escherichia coli (strain 55989 / EAEC) GN=fadI PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.947e-18
Identity = 59/189 (31.22%), Postives = 93/189 (49.21%), Query Frame = -2
Query:  202 GKFDPAKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVE 714
            G    A   KLRP+F    GTVTA N++ ++DGA A++L++  +  +LGL  +  +  YA  A    +     PA + P A+  AGL  S +   +++EAFA   LAN +LLG                 ++  K NV GG++A GHP   +GAR++   L  L ++   +            +A+V+E
Sbjct:  246 GNSSLADYAKLRPAFDRKHGTVTAANSTPLTDGAAAVILMTESRAKELGLVPLGYLRSYAFTAIDVWQDMLLGPAWSTPLALERAGLTMSDLTLIDMHEAFAAQTLANIQLLGSERFAREVLGRAHATGEVDDSKFNVLGGSIAYGHPFAATGARMITQTLHELHRRGGGFGLVTACAAGGLGAAMVLE 434          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_SHEWM (3-ketoacyl-CoA thiolase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=fadI PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.543e-18
Identity = 57/181 (31.49%), Postives = 90/181 (49.72%), Query Frame = -2
Query:  199 KLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVEL 687
            KLRP+F    GTVTA  ++ ++DGA+A++L+S  +   LG   I  I  YA  A    E     P+ A P A+  AG+E   +   E++EAFA  ALAN K+                   ++ +K NV GG++A GHP   +GAR++  +   L+++                +A++VE+
Sbjct:  255 KLRPAFDRKHGTVTAATSTPLTDGASAILLMSESRAKALGYNPIGYIKSYAFSAIDVWEDMLMGPSYATPIALKRAGMELEDLTLIEMHEAFAAQALANMKMFASKKFAQEKLGRNRAIGEIDMNKFNVLGGSLAYGHPFAATGARLITQVCNELKRRGGGTGLTTACAAGGLGAAMIVEV 435          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_ESCF3 (3-ketoacyl-CoA thiolase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=fadI PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.322e-18
Identity = 56/184 (30.43%), Postives = 93/184 (50.54%), Query Frame = -2
Query:  202 AKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVE 699
            A   +LRP+F    GTVTA N++ ++DGA A+++++  +  +LGL  +  +  YA  A    +     PA + P A+  AGL  + +   +++EAFA   LAN +LLG                 ++  K NV GG++A GHP   +GAR++   L  LR++   +            +A+V+E
Sbjct:  251 ADYARLRPAFDRKHGTVTAANSTPLTDGAAAVIMMTESRAKELGLTPLGYLRSYAFTAIDVWQDMLLGPAWSTPLALDRAGLTLADLTLIDMHEAFAAQTLANVQLLGSERFARDVLGRAHATGEVDDSKFNVLGGSIAYGHPFAATGARMITQTLHELRRRGGGFGLVTACAAGGLGAAMVLE 434          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_SHEFN (3-ketoacyl-CoA thiolase OS=Shewanella frigidimarina (strain NCIMB 400) GN=fadI PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.338e-18
Identity = 53/158 (33.54%), Postives = 83/158 (52.53%), Query Frame = -2
Query:  268 KLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQK 687
            KLRP+F    GTVTA N++ ++DGA+A++L+S  +   LG Q I  I  YA  A    +     P+ A P A+  AG+E   +   E++EAFA   LAN ++ G                 ++  K NV GG++A GHP   +G R++  +   L+++
Sbjct:  255 KLRPAFDRKHGTVTAANSTPLTDGASAIILMSEGRAKALGYQPIGYIKSYAFTAIDVWQDMLMGPSYATPLALKRAGMELEDLTLIEMHEAFAAQTLANMQMFGSKKFAEEKLGRNRAIGEIDMSKFNVLGGSLAYGHPFAATGTRLITQVCNELKRR 412          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_SHIBS (3-ketoacyl-CoA thiolase OS=Shigella boydii serotype 4 (strain Sb227) GN=fadI PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.666e-18
Identity = 59/189 (31.22%), Postives = 93/189 (49.21%), Query Frame = -2
Query:  202 GKFDPAKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVE 714
            G    A   KLRP+F    GTVTA N++ ++DGA A++L++  +  +LGL  +  +  YA  A    +     PA + P A+  AGL  S +   +++EAFA   LAN +LLG                 ++  K NV GG++A GHP   +GA ++   L  LR++   +            +A+V+E
Sbjct:  246 GNSSLADYAKLRPAFDRKHGTVTAANSTPLTDGAAAVILMTESRAKELGLVPLGYLRSYAFTAIDVWQDMLFGPAWSTPLALERAGLTMSDLTLIDMHEAFAAQTLANIQLLGSERFACEVLGRAHATGEVDDSKFNVLGGSIAYGHPFAATGAWMITQTLHELRRRGGGFGLVTACAAGGLGAAMVLE 434          
The following BLAST results are available for this feature:
BLAST of CB304629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
FADI_ECOK11.491e-1831.223-ketoacyl-CoA thiolase OS=Escherichia coli O1:K1 ... [more]
FADI_ECO451.491e-1831.223-ketoacyl-CoA thiolase OS=Escherichia coli O45:K1... [more]
FADI_VIBVY1.947e-1830.393-ketoacyl-CoA thiolase OS=Vibrio vulnificus (stra... [more]
FADI_VIBVU1.947e-1830.393-ketoacyl-CoA thiolase OS=Vibrio vulnificus GN=fa... [more]
FADI_ECO811.947e-1831.223-ketoacyl-CoA thiolase OS=Escherichia coli O81 (s... [more]
FADI_ECO551.947e-1831.223-ketoacyl-CoA thiolase OS=Escherichia coli (strai... [more]
FADI_SHEWM2.543e-1831.493-ketoacyl-CoA thiolase OS=Shewanella woodyi (stra... [more]
FADI_ESCF33.322e-1830.433-ketoacyl-CoA thiolase OS=Escherichia fergusonii ... [more]
FADI_SHEFN4.338e-1833.543-ketoacyl-CoA thiolase OS=Shewanella frigidimarin... [more]
FADI_SHIBS5.666e-1831.223-ketoacyl-CoA thiolase OS=Shigella boydii serotyp... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_F05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_F05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304629 ID=CB304629; Name=CB304629; organism=Citrus sinensis; type=EST; length=718bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAGCAAAGCCAGCCAGATA
ATTATTATCTTTTTATTGAAGACGAAAGCACATATGAATAAGAAATGGAG
ATACAATTGCACAACACCCCACCCAAATGGGCCATAATTATCCTCCACAA
GAAGGGTGCAACCTCGTTGATAATAATCCGAACAGAAAATGCTTACACAA
GCTCTACAACAAGTGCCGATGCACCTCCTCCTCCGTTGCAAACGCCACCA
ACACCGTATTTCCAGTTTTTCTGCCTAAGTACCCCCAAAAGTGTGACCAA
GATACGAGCTCCGCTGCAGCCCAGAGGATGTCCCAAAGCTACTGCTCCAC
CATGGACATTAACCTTGTCAGGATTTAGTCCAAGCAATTTCTGGTTTGCA
AGGGCGACGACAGCAAAGGCCTCATTTATTTCGTAACAGTCAACTTGAGA
AGCCTCCAAGCCAGCATTTGAAATGGCTTTAGGTATGGCTAGGGCTGGAG
CTGTTGTAAACATCTCTGGTGCCTGAGCAGCATCAGCATATCCTGTGATC
TTGGCGATCACTTGCAAACCCAGCTTAAGTACCTTCTCTCCACTGACTAG
AACTAATGCTGTAGCTCCATCACTTATACTAGAGGCATTGCCAGCCGTAA
CAGTTCCTCCATTCTCCTTGAAACTTGGTCGAAGCTTCCTCAATTTTGCC
GGGTCAAACTTGCCTAAA
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