CB304629

Overview
NameCB304629
Unique NameCB304629
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_KLEP3 (3-ketoacyl-CoA thiolase OS=Klebsiella pneumoniae (strain 342) GN=fadI PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.666e-18
Identity = 56/184 (30.43%), Postives = 92/184 (50.00%), Query Frame = -2
Query:  202 AKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVE 699
            A  +KLRP+F    GTVTA N++ ++DGA A++L++  +  +LGL  +  +  YA  A    +     PA + P A+  AGL  + +   +++EAFA   LAN + L                  ++  K NV GG++A GHP   +GAR++   L  LR++   +            +A++VE
Sbjct:  251 ADYQKLRPAFDRKHGTVTAANSTPLTDGAAAVILMTESRAKELGLTPLGYLRSYAFTAIDVWQDMLLGPAWSTPLALERAGLTLADLTLIDMHEAFAAQTLANLQCLASERFAREVLGRSQATGEVDESKFNVLGGSIAYGHPFAATGARMITQTLHELRRRGGGFGLVTACAAGGLGAAMIVE 434          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_ENTS8 (3-ketoacyl-CoA thiolase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=fadI PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.666e-18
Identity = 56/184 (30.43%), Postives = 91/184 (49.46%), Query Frame = -2
Query:  202 AKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVE 699
            A   KLRP+F    GTVTA N++ ++DGA A++L++  +  +LGL  +  +  YA  A    +     PA + P A+  AGL  + +   +++EAFA   L N KL+                  ++  K NV GG++A GHP   +GAR++   L  LR++   +            +A+V+E
Sbjct:  251 ADYAKLRPAFDRKHGTVTAANSTPLTDGAAAVILMTESRARELGLTPLGYLRSYAFTAVDVWQDMLLGPAWSTPLALERAGLTMADLTLIDMHEAFASQTLTNLKLMASDRFAREVLGRSQATGEVDESKFNVLGGSIAYGHPFAATGARMITQTLNELRRRGGGFGLVTACAAGGLGAAMVLE 434          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_VIBFM (3-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain MJ11) GN=fadI PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.400e-18
Identity = 55/185 (29.73%), Postives = 91/185 (49.19%), Query Frame = -2
Query:  199 AKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNP-----------------DKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVEL 699
            A   KLRP+F    G+VTA N++ ++DG  AL+L+S ++  +LG + +  I  +A  A          P+ A P A+  AG+  S +   +++EAFA   L+N K+   N                  DK NV GG++A GHP   +GAR+++  L  L+++                +A+V+E+
Sbjct:  257 ASYAKLRPAFDRKYGSVTAANSTPLTDGGAALLLMSEKRAKELGYEPLGYIRSFAFSAIDVHHDMLMGPSYATPMALDKAGISLSDLTLIDMHEAFAAQTLSNVKMFASNKFARECLGRDKAIGEIDMDKFNVLGGSIAYGHPFAATGARMIIQTLRELKRRGGGLGLNTACAAGGLGAAMVLEV 441          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_KLEP7 (3-ketoacyl-CoA thiolase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=fadI PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.400e-18
Identity = 55/184 (29.89%), Postives = 93/184 (50.54%), Query Frame = -2
Query:  202 AKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVE 699
            A  +KLRP+F    GTVTA N++ ++DGA A++L++  +  +LGL+ +  +  YA  A    +     PA + P A+  AGL  + +   +++EAFA   LAN + L                  ++  K NV GG++A GHP   +GAR++   L  +R++   +            +A++VE
Sbjct:  251 ADYQKLRPAFDRKHGTVTAANSTPLTDGAAAVILMTESRAKELGLRPLGYLRSYAFTAIDVWQDMLLGPAWSTPLALERAGLTLADLTLIDMHEAFAAQTLANLQCLASDRFAREVLGRSQATGEVDESKFNVLGGSIAYGHPFAATGARMITQTLHEVRRRGGGFGLVTACAAGGLGAAMIVE 434          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_YERE8 (3-ketoacyl-CoA thiolase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=fadI PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.665e-18
Identity = 54/181 (29.83%), Postives = 91/181 (50.28%), Query Frame = -2
Query:  199 KLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVEL 687
            KLRP+F    G+VTA N++ ++DGA A++++S  K  +LGLQ +  +  +A  A    +     P+ A P A+  AG+  + +   +++EAFA   LAN K+                   ++  K NV GG++A GHP   +GAR++   L  LR++                +A++VE+
Sbjct:  255 KLRPAFDRKHGSVTAANSTPLTDGAAAVMMMSESKAKELGLQPLGYLRSFAFSAIDVWQDMLLGPSYATPLALDRAGITLADLTLIDMHEAFAAQTLANLKMFASDSFAREKLGRSQAIGEVDMSKFNVLGGSIAYGHPFAATGARMITQTLNELRRRGGGLGLTTACAAGGLGAAMIVEV 435          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_VIBF1 (3-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=fadI PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.665e-18
Identity = 55/187 (29.41%), Postives = 92/187 (49.20%), Query Frame = -2
Query:  199 DPAKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNP-----------------DKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVEL 705
            D A   KLRP+F    G+VTA N++ ++DG  AL+L+S ++  +LG + +  I  +A  A          P+ A P A+  AG+  S +   +++EAFA   L+N K+   N                  +K NV GG++A GHP   +GAR+++  L  L+++                +A+V+E+
Sbjct:  255 DLASYAKLRPAFDHKYGSVTAANSTPLTDGGAALLLMSEKRAKELGYEPLGYIRSFAFSAIDVHHDMLMGPSYATPMALDKAGISLSDLTLIDMHEAFAAQTLSNVKMFASNKFAKEYLGRDKAIGEIDMEKFNVLGGSIAYGHPFAATGARMIIQTLRELKRRGGGLGLNTACAAGGLGAAMVLEV 441          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_SHEON (3-ketoacyl-CoA thiolase OS=Shewanella oneidensis GN=fadI PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.665e-18
Identity = 56/187 (29.95%), Postives = 92/187 (49.20%), Query Frame = -2
Query:  199 DPAKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVEL 705
            D A   KLRP+F +  G+VTA N++ ++DGA+A++L+S  +   LG Q I  I  YA  A    +     P+ A P A+  AG+E   +   E++EAFA   LAN ++                   ++  K NV GG++A GHP   +G R++  +   L+++                +A++VE+
Sbjct:  249 DLASYAKLRPAFDKKHGSVTAANSTPLTDGASAIILMSEGRAKALGYQPIGYIKSYAFTAIDVWQDMLMGPSYATPLALKRAGMELEDLTLIEMHEAFAAQTLANMQMFASKKFAEEKLGRNRAIGDIDMSKFNVLGGSLAYGHPFAATGTRLITQVCRELKRRGGGTGLATACAAGGLGAAMIVEV 435          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_SHEDO (3-ketoacyl-CoA thiolase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=fadI PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.665e-18
Identity = 55/181 (30.39%), Postives = 90/181 (49.72%), Query Frame = -2
Query:  199 KLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVEL 687
            KLRP+F    G+VTA N++ ++DGA+A++L+S  +   LG Q I  I  YA  A    +     P+ A P A+  AG+E   +   E++EAFA   LAN ++ G                 ++  K NV GG++A GHP   +G R++  +   L+++                +A++VE+
Sbjct:  255 KLRPAFDRKHGSVTAANSTPLTDGASAIILMSEGRAKALGYQPIGYIKSYAFTAIDVWQDMLMGPSYATPLALKRAGMELEDLTLIEMHEAFAAQTLANMQMFGSKKFAAEKLGRNRAIGDIDMSKFNVLGGSLAYGHPFAATGTRLITQVCRELKRRGGGTGLATACAAGGLGAAMIVEV 435          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_ERWCT (3-ketoacyl-CoA thiolase OS=Erwinia carotovora subsp. atroseptica GN=fadI PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.665e-18
Identity = 59/181 (32.60%), Postives = 92/181 (50.83%), Query Frame = -2
Query:  199 KLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEM-FTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKL----------LGLNP-------DKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVEL 687
            +LRP+F    GTVTA N++ ++DGA A++++S  K   LGL  +  +  YA +A   +      PA A P A++ AG+  + +   +++EAFA   LAN KL          LG N         K NV GG++A GHP   +GAR++   L  LR++                +A+V+E+
Sbjct:  255 RLRPAFDRRHGTVTAANSTPLTDGAAAVLMMSESKAKSLGLTPLGYLRSYAFSAIGVQRDMLLGPAYASPLALARAGVALADLTLIDMHEAFAAQTLANLKLFASDEFARNQLGRNAALGEVDRAKFNVLGGSIAYGHPFAATGARMITQTLNELRRRGGGLGLTTACAAGGLGAAMVLEV 435          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_SERP5 (3-ketoacyl-CoA thiolase OS=Serratia proteamaculans (strain 568) GN=fadI PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.262e-17
Identity = 54/185 (29.19%), Postives = 93/185 (50.27%), Query Frame = -2
Query:  199 AKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVEL 699
            A   KL+P+F    G+VTA N++ ++DGA A++++S  +  +LGLQ +  +  +A  A    E     P+ A P A+  AG+  + +   +++EAFA   LAN K+                   ++ DK NV GG++A GHP   +GAR++   L  L+++                +A++VE+
Sbjct:  251 ASYAKLKPAFDRKHGSVTAANSTPLTDGAAAVLMMSESRAKELGLQPLGYLRSFAFSAIDVWEDMLLGPSYATPLALDRAGIGLADLTLIDMHEAFAAQTLANLKMFASDEFAQQKLGRSRAIGEVDMDKFNVLGGSIAYGHPFAATGARMITQTLHELKRRGGGLGLTTACAAGGLGAAMIVEV 435          
The following BLAST results are available for this feature:
BLAST of CB304629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
FADI_KLEP35.666e-1830.433-ketoacyl-CoA thiolase OS=Klebsiella pneumoniae (... [more]
FADI_ENTS85.666e-1830.433-ketoacyl-CoA thiolase OS=Enterobacter sakazakii ... [more]
FADI_VIBFM7.400e-1829.733-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain... [more]
FADI_KLEP77.400e-1829.893-ketoacyl-CoA thiolase OS=Klebsiella pneumoniae s... [more]
FADI_YERE89.665e-1829.833-ketoacyl-CoA thiolase OS=Yersinia enterocolitica... [more]
FADI_VIBF19.665e-1829.413-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain... [more]
FADI_SHEON9.665e-1829.953-ketoacyl-CoA thiolase OS=Shewanella oneidensis G... [more]
FADI_SHEDO9.665e-1830.393-ketoacyl-CoA thiolase OS=Shewanella denitrifican... [more]
FADI_ERWCT9.665e-1832.603-ketoacyl-CoA thiolase OS=Erwinia carotovora subs... [more]
FADI_SERP51.262e-1729.193-ketoacyl-CoA thiolase OS=Serratia proteamaculans... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_F05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_F05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304629 ID=CB304629; Name=CB304629; organism=Citrus sinensis; type=EST; length=718bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAGCAAAGCCAGCCAGATA
ATTATTATCTTTTTATTGAAGACGAAAGCACATATGAATAAGAAATGGAG
ATACAATTGCACAACACCCCACCCAAATGGGCCATAATTATCCTCCACAA
GAAGGGTGCAACCTCGTTGATAATAATCCGAACAGAAAATGCTTACACAA
GCTCTACAACAAGTGCCGATGCACCTCCTCCTCCGTTGCAAACGCCACCA
ACACCGTATTTCCAGTTTTTCTGCCTAAGTACCCCCAAAAGTGTGACCAA
GATACGAGCTCCGCTGCAGCCCAGAGGATGTCCCAAAGCTACTGCTCCAC
CATGGACATTAACCTTGTCAGGATTTAGTCCAAGCAATTTCTGGTTTGCA
AGGGCGACGACAGCAAAGGCCTCATTTATTTCGTAACAGTCAACTTGAGA
AGCCTCCAAGCCAGCATTTGAAATGGCTTTAGGTATGGCTAGGGCTGGAG
CTGTTGTAAACATCTCTGGTGCCTGAGCAGCATCAGCATATCCTGTGATC
TTGGCGATCACTTGCAAACCCAGCTTAAGTACCTTCTCTCCACTGACTAG
AACTAATGCTGTAGCTCCATCACTTATACTAGAGGCATTGCCAGCCGTAA
CAGTTCCTCCATTCTCCTTGAAACTTGGTCGAAGCTTCCTCAATTTTGCC
GGGTCAAACTTGCCTAAA
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