CB304629

Overview
NameCB304629
Unique NameCB304629
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_SHEB5 (3-ketoacyl-CoA thiolase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=fadI PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.153e-17
Identity = 52/158 (32.91%), Postives = 83/158 (52.53%), Query Frame = -2
Query:  268 KLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQK 687
            KLRP+F +  GTVTA N++ ++DGA+A++L+S  +   LG Q I  I  YA  A    +     P+ A P A+  AG+E   +   E++EAFA   LAN ++                   ++  K NV GG++A GHP   +G R++  +   L+++
Sbjct:  255 KLRPAFDKQHGTVTAANSTPLTDGASAIILMSEGRAKALGYQPIGYIKSYAFSAIDVWQDMLMGPSYATPLALKRAGMELEDLTLIEMHEAFAAQTLANMQMFASKKFAEEKLGRNRAIGEIDMSKFNVLGGSLAYGHPFAATGTRLITQVCRELKRR 412          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_SHEB2 (3-ketoacyl-CoA thiolase OS=Shewanella baltica (strain OS223) GN=fadI PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.153e-17
Identity = 52/158 (32.91%), Postives = 83/158 (52.53%), Query Frame = -2
Query:  268 KLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQK 687
            KLRP+F +  GTVTA N++ ++DGA+A++L+S  +   LG Q I  I  YA  A    +     P+ A P A+  AG+E   +   E++EAFA   LAN ++                   ++  K NV GG++A GHP   +G R++  +   L+++
Sbjct:  255 KLRPAFDKQHGTVTAANSTPLTDGASAIILMSEGRAKALGYQPIGYIKSYAFSAIDVWQDMLMGPSYATPLALKRAGMELEDLTLIEMHEAFAAQTLANMQMFASKKFAEEKLGRNRAIGEIDMSKFNVLGGSLAYGHPFAATGTRLITQVCRELKRR 412          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_SHESH (3-ketoacyl-CoA thiolase OS=Shewanella sediminis (strain HAW-EB3) GN=fadI PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.812e-17
Identity = 55/181 (30.39%), Postives = 88/181 (48.62%), Query Frame = -2
Query:  199 KLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVEL 687
            KLRP+F    GTVTA  ++ ++DGA+A++L+S  +   LG   I  I  YA  A    E     P+ A P A+  AG+E   +   E++EAFA   LAN ++ G                 ++  K NV GG++A GHP   +G R++  +   L+++                +A++VE+
Sbjct:  255 KLRPAFDRKHGTVTAATSTPLTDGASAVLLMSESRAKALGYDPIGYIKSYAFSAIDVWEDMLMGPSYATPLALKRAGMELEDLTLIEMHEAFAAQTLANMQMFGSKKFAAEKLGRNRAIGEIDMSKFNVLGGSLAYGHPFAATGTRLITQVCRELKRRGGGTGLTTACAAGGLGAAMIVEV 435          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_SHEPW (3-ketoacyl-CoA thiolase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=fadI PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.673e-17
Identity = 55/181 (30.39%), Postives = 89/181 (49.17%), Query Frame = -2
Query:  199 KLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVEL 687
            KLRP+F    G+VTA N++ ++DGA+A++L+S  +   LG   I  I  YA  A    E     P+ A P A+  AG+E   +   E++EAFA   LAN ++ G                 ++  K NV GG++A GHP   +G R++  +   L+++                +A++VE+
Sbjct:  255 KLRPAFDRKHGSVTAANSTPLTDGASAVLLMSEGRAKALGYTPIGYIKSYAFTAIDVWEDMLMGPSYATPMALKRAGMELEDLTLIEMHEAFAAQTLANMQMFGSKKFAEEKLGRNRAIGEIDMSKFNVLGGSLAYGHPFAATGTRLITQVCHELKRRGGGTGLATACAAGGLGAAMIVEV 435          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_ERWT9 (3-ketoacyl-CoA thiolase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=fadI PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.673e-17
Identity = 51/181 (28.18%), Postives = 91/181 (50.28%), Query Frame = -2
Query:  199 KLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVEL 687
            +LRP+F    GTVTA N++ ++DGA A++L++  +  +LG+  +  +  YA  A    +     P+ A P A+  AG+  + +   +++EAFA   LAN K+                   ++ ++ NV GG++A GHP   +GAR++   L  LR++                +A+V+E+
Sbjct:  255 RLRPAFDRRHGTVTAANSTPLTDGAAAVILMTASRARELGIAPLGFLRSYAFSAIDVRQDMLLGPSYASPLALDRAGITLADLSLIDMHEAFAAQTLANLKMFADERFAREVLDRPRALGEVDMERFNVLGGSIAYGHPFAATGARMITQTLNELRRRGGGLGLVTACAAGGLGAAMVLEV 435          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_COLP3 (3-ketoacyl-CoA thiolase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=fadI PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.673e-17
Identity = 54/180 (30.00%), Postives = 88/180 (48.89%), Query Frame = -2
Query:  202 KLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAA-QAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVE 687
            KL+P F    GTVTA  ++ ++DG  A++L+   +  +LG + +  I  +  AA    +     P+ A P A+  AG+  + +D  E++EAFA  ALAN K+ G                 ++ DK NV GG++A GHP   +GAR++   L  L ++                +A++VE
Sbjct:  254 KLKPVFDRKHGTVTAATSTPLTDGGAAILLMREGRAKELGYKPLGYIRSFGFAAIDVWQDMLMGPSYATPIALQRAGMNLADLDLIEMHEAFAAQALANMKMFGSTKFAQEQLGRDKAIGDIDMDKFNVMGGSLAYGHPFAATGARLITQTLNELNRRGGGVGLTTACAAGGLGAAMIVE 433          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_SHEPA (3-ketoacyl-CoA thiolase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=fadI PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.264e-17
Identity = 55/181 (30.39%), Postives = 89/181 (49.17%), Query Frame = -2
Query:  199 KLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVEL 687
            KLRP+F    G+VTA N++ ++DGA+A++L+S  +   LG   I  I  YA  A    E     P+ A P A+  AG+E   +   E++EAFA   LAN ++ G                 ++  K NV GG++A GHP   +G R++  +   L+++                +A++VE+
Sbjct:  255 KLRPAFDRKHGSVTAANSTPLTDGASAVLLMSEGRAKALGYTPIGYIKSYAFTAIDVWEDMLMGPSYATPLALKRAGMELEDLTLIEMHEAFAAQTLANMQMFGSKKFAEEKLGRNRAIGEIDMSKFNVLGGSLAYGHPFAATGTRLVTQVCHELKRRGGGTGLATACAAGGLGAAMIVEV 435          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_YERPY (3-ketoacyl-CoA thiolase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=fadI PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.182e-17
Identity = 53/185 (28.65%), Postives = 91/185 (49.19%), Query Frame = -2
Query:  199 AKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVEL 699
            A+  KLRP+F    G+VTA N++ ++DGA A++++S  K   LGL  +  +  +A  A    +     P+ A P A+  AG+  + +   +++EAFA   LAN K+                   ++  K NV GG++A GHP   +GAR++   L  LR++                +A+++E+
Sbjct:  251 AQYAKLRPAFDRQHGSVTAANSTPLTDGAAAVLMMSESKAKALGLPPLGYLRSFAFSAIDVWQDMLLGPSYATPLALDRAGITLADLTLIDMHEAFAAQTLANLKMFASDTFAREKLGRSQAIGEVDMSKFNVLGGSIAYGHPFAATGARMITQTLNELRRRGGGLGLTTACAAGGLGAAMILEV 435          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_YERPS (3-ketoacyl-CoA thiolase OS=Yersinia pseudotuberculosis GN=fadI PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.182e-17
Identity = 53/185 (28.65%), Postives = 91/185 (49.19%), Query Frame = -2
Query:  199 AKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVEL 699
            A+  KLRP+F    G+VTA N++ ++DGA A++++S  K   LGL  +  +  +A  A    +     P+ A P A+  AG+  + +   +++EAFA   LAN K+                   ++  K NV GG++A GHP   +GAR++   L  LR++                +A+++E+
Sbjct:  251 AQYAKLRPAFDRQHGSVTAANSTPLTDGAAAVLMMSESKAKALGLPPLGYLRSFAFSAIDVWQDMLLGPSYATPLALDRAGITLADLTLIDMHEAFAAQTLANLKMFASDTFAREKLGRSQAIGEVDMSKFNVLGGSIAYGHPFAATGARMITQTLNELRRRGGGLGLTTACAAGGLGAAMILEV 435          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_YERPP (3-ketoacyl-CoA thiolase OS=Yersinia pestis (strain Pestoides F) GN=fadI PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.182e-17
Identity = 53/185 (28.65%), Postives = 91/185 (49.19%), Query Frame = -2
Query:  199 AKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVEL 699
            A+  KLRP+F    G+VTA N++ ++DGA A++++S  K   LGL  +  +  +A  A    +     P+ A P A+  AG+  + +   +++EAFA   LAN K+                   ++  K NV GG++A GHP   +GAR++   L  LR++                +A+++E+
Sbjct:  251 AQYAKLRPAFDRQHGSVTAANSTPLTDGAAAVLMMSESKAKALGLPPLGYLRSFAFSAIDVWQDMLLGPSYATPLALDRAGITLADLTLIDMHEAFAAQTLANLKMFASDTFAREKLGRSQAIGEVDMSKFNVLGGSIAYGHPFAATGARMITQTLNELRRRGGGLGLTTACAAGGLGAAMILEV 435          
The following BLAST results are available for this feature:
BLAST of CB304629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
FADI_SHEB52.153e-1732.913-ketoacyl-CoA thiolase OS=Shewanella baltica (str... [more]
FADI_SHEB22.153e-1732.913-ketoacyl-CoA thiolase OS=Shewanella baltica (str... [more]
FADI_SHESH2.812e-1730.393-ketoacyl-CoA thiolase OS=Shewanella sediminis (s... [more]
FADI_SHEPW3.673e-1730.393-ketoacyl-CoA thiolase OS=Shewanella piezotoleran... [more]
FADI_ERWT93.673e-1728.183-ketoacyl-CoA thiolase OS=Erwinia tasmaniensis (s... [more]
FADI_COLP33.673e-1730.003-ketoacyl-CoA thiolase OS=Colwellia psychrerythra... [more]
FADI_SHEPA6.264e-1730.393-ketoacyl-CoA thiolase OS=Shewanella pealeana (st... [more]
FADI_YERPY8.182e-1728.653-ketoacyl-CoA thiolase OS=Yersinia pseudotubercul... [more]
FADI_YERPS8.182e-1728.653-ketoacyl-CoA thiolase OS=Yersinia pseudotubercul... [more]
FADI_YERPP8.182e-1728.653-ketoacyl-CoA thiolase OS=Yersinia pestis (strain... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_F05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_F05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304629 ID=CB304629; Name=CB304629; organism=Citrus sinensis; type=EST; length=718bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAGCAAAGCCAGCCAGATA
ATTATTATCTTTTTATTGAAGACGAAAGCACATATGAATAAGAAATGGAG
ATACAATTGCACAACACCCCACCCAAATGGGCCATAATTATCCTCCACAA
GAAGGGTGCAACCTCGTTGATAATAATCCGAACAGAAAATGCTTACACAA
GCTCTACAACAAGTGCCGATGCACCTCCTCCTCCGTTGCAAACGCCACCA
ACACCGTATTTCCAGTTTTTCTGCCTAAGTACCCCCAAAAGTGTGACCAA
GATACGAGCTCCGCTGCAGCCCAGAGGATGTCCCAAAGCTACTGCTCCAC
CATGGACATTAACCTTGTCAGGATTTAGTCCAAGCAATTTCTGGTTTGCA
AGGGCGACGACAGCAAAGGCCTCATTTATTTCGTAACAGTCAACTTGAGA
AGCCTCCAAGCCAGCATTTGAAATGGCTTTAGGTATGGCTAGGGCTGGAG
CTGTTGTAAACATCTCTGGTGCCTGAGCAGCATCAGCATATCCTGTGATC
TTGGCGATCACTTGCAAACCCAGCTTAAGTACCTTCTCTCCACTGACTAG
AACTAATGCTGTAGCTCCATCACTTATACTAGAGGCATTGCCAGCCGTAA
CAGTTCCTCCATTCTCCTTGAAACTTGGTCGAAGCTTCCTCAATTTTGCC
GGGTCAAACTTGCCTAAA
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