CB304629

Overview
NameCB304629
Unique NameCB304629
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_YERPN (3-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=fadI PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.182e-17
Identity = 53/185 (28.65%), Postives = 91/185 (49.19%), Query Frame = -2
Query:  199 AKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVEL 699
            A+  KLRP+F    G+VTA N++ ++DGA A++++S  K   LGL  +  +  +A  A    +     P+ A P A+  AG+  + +   +++EAFA   LAN K+                   ++  K NV GG++A GHP   +GAR++   L  LR++                +A+++E+
Sbjct:  251 AQYAKLRPAFDRQHGSVTAANSTPLTDGAAAVLMMSESKAKALGLPPLGYLRSFAFSAIDVWQDMLLGPSYATPLALDRAGITLADLTLIDMHEAFAAQTLANLKMFASDTFAREKLGRSQAIGEVDMSKFNVLGGSIAYGHPFAATGARMITQTLNELRRRGGGLGLTTACAAGGLGAAMILEV 435          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_YERPG (3-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=fadI PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.182e-17
Identity = 53/185 (28.65%), Postives = 91/185 (49.19%), Query Frame = -2
Query:  199 AKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVEL 699
            A+  KLRP+F    G+VTA N++ ++DGA A++++S  K   LGL  +  +  +A  A    +     P+ A P A+  AG+  + +   +++EAFA   LAN K+                   ++  K NV GG++A GHP   +GAR++   L  LR++                +A+++E+
Sbjct:  251 AQYAKLRPAFDRQHGSVTAANSTPLTDGAAAVLMMSESKAKALGLPPLGYLRSFAFSAIDVWQDMLLGPSYATPLALDRAGITLADLTLIDMHEAFAAQTLANLKMFASDTFAREKLGRSQAIGEVDMSKFNVLGGSIAYGHPFAATGARMITQTLNELRRRGGGLGLTTACAAGGLGAAMILEV 435          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_YERPE (3-ketoacyl-CoA thiolase OS=Yersinia pestis GN=fadI PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.182e-17
Identity = 53/185 (28.65%), Postives = 91/185 (49.19%), Query Frame = -2
Query:  199 AKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVEL 699
            A+  KLRP+F    G+VTA N++ ++DGA A++++S  K   LGL  +  +  +A  A    +     P+ A P A+  AG+  + +   +++EAFA   LAN K+                   ++  K NV GG++A GHP   +GAR++   L  LR++                +A+++E+
Sbjct:  251 AQYAKLRPAFDRQHGSVTAANSTPLTDGAAAVLMMSESKAKALGLPPLGYLRSFAFSAIDVWQDMLLGPSYATPLALDRAGITLADLTLIDMHEAFAAQTLANLKMFASDTFAREKLGRSQAIGEVDMSKFNVLGGSIAYGHPFAATGARMITQTLNELRRRGGGLGLTTACAAGGLGAAMILEV 435          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_YERPB (3-ketoacyl-CoA thiolase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=fadI PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.182e-17
Identity = 53/185 (28.65%), Postives = 91/185 (49.19%), Query Frame = -2
Query:  199 AKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVEL 699
            A+  KLRP+F    G+VTA N++ ++DGA A++++S  K   LGL  +  +  +A  A    +     P+ A P A+  AG+  + +   +++EAFA   LAN K+                   ++  K NV GG++A GHP   +GAR++   L  LR++                +A+++E+
Sbjct:  251 AQYAKLRPAFDRQHGSVTAANSTPLTDGAAAVLMMSESKAKALGLPPLGYLRSFAFSAIDVWQDMLLGPSYATPLALDRAGITLADLTLIDMHEAFAAQTLANLKMFASDTFAREKLGRSQAIGEVDMSKFNVLGGSIAYGHPFAATGARMITQTLNELRRRGGGLGLTTACAAGGLGAAMILEV 435          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_YERPA (3-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=fadI PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.182e-17
Identity = 53/185 (28.65%), Postives = 91/185 (49.19%), Query Frame = -2
Query:  199 AKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVEL 699
            A+  KLRP+F    G+VTA N++ ++DGA A++++S  K   LGL  +  +  +A  A    +     P+ A P A+  AG+  + +   +++EAFA   LAN K+                   ++  K NV GG++A GHP   +GAR++   L  LR++                +A+++E+
Sbjct:  251 AQYAKLRPAFDRQHGSVTAANSTPLTDGAAAVLMMSESKAKALGLPPLGYLRSFAFSAIDVWQDMLLGPSYATPLALDRAGITLADLTLIDMHEAFAAQTLANLKMFASDTFAREKLGRSQAIGEVDMSKFNVLGGSIAYGHPFAATGARMITQTLNELRRRGGGLGLTTACAAGGLGAAMILEV 435          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_YERP3 (3-ketoacyl-CoA thiolase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=fadI PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.182e-17
Identity = 53/185 (28.65%), Postives = 91/185 (49.19%), Query Frame = -2
Query:  199 AKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVEL 699
            A+  KLRP+F    G+VTA N++ ++DGA A++++S  K   LGL  +  +  +A  A    +     P+ A P A+  AG+  + +   +++EAFA   LAN K+                   ++  K NV GG++A GHP   +GAR++   L  LR++                +A+++E+
Sbjct:  251 AQYAKLRPAFDRQHGSVTAANSTPLTDGAAAVLMMSESKAKALGLPPLGYLRSFAFSAIDVWQDMLLGPSYATPLALDRAGITLADLTLIDMHEAFAAQTLANLKMFASDTFAREKLGRSQAIGEVDMSKFNVLGGSIAYGHPFAATGARMITQTLNELRRRGGGLGLTTACAAGGLGAAMILEV 435          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_AERS4 (3-ketoacyl-CoA thiolase OS=Aeromonas salmonicida (strain A449) GN=fadI PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.182e-17
Identity = 54/164 (32.93%), Postives = 85/164 (51.83%), Query Frame = -2
Query:  268 DPAKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQK 705
            D A   KL+P F    GTVTA NA+ ++DGA A++L+   +  +LGL+ +  I  +A  A    +     P+ A P A+  AG+  + +   +++EAFA   LAN K+                   ++ DK NV GG++A GHP   +GAR++   L  LR++
Sbjct:  249 DLASYAKLKPVFDRVHGTVTAANATPLTDGAAAVLLMREGRAKELGLEPLGYIRSFAFSAIDVWQDMLMGPSYATPLALERAGITLADLTLIDMHEAFAAQTLANLKMFASAEFARDKLGRSQAIGEVDMDKFNVLGGSLAYGHPFAATGARMITQTLHELRRR 412          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_AERHH (3-ketoacyl-CoA thiolase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=fadI PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.182e-17
Identity = 54/164 (32.93%), Postives = 85/164 (51.83%), Query Frame = -2
Query:  268 DPAKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQK 705
            D A   KL+P F    G+VTA NA+ ++DGA A++L+   +  +LGL+ +  I  +A  A    +     P+ A P A+  AG+  S +   +++EAFA   LAN K+                   ++ DK NV GG++A GHP   +GAR++   L  LR++
Sbjct:  249 DLASYAKLKPVFDRVHGSVTAANATPLTDGAAAVLLMREGRARELGLEPLGYIRSFAFSAIDVWQDMLMGPSYATPLALDRAGITLSDLTLIDMHEAFAAQTLANLKMFASKEFAQSKLGRDQAIGEVDMDKFNVLGGSLAFGHPFAATGARMITQTLHELRRR 412          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_PHOLL (3-ketoacyl-CoA thiolase OS=Photorhabdus luminescens subsp. laumondii GN=fadI PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.069e-16
Identity = 54/181 (29.83%), Postives = 88/181 (48.62%), Query Frame = -2
Query:  199 KLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVEL 687
            KLRP+F    GTVTA N++ ++DGA A++L+       LG + +  +  YA  A    +     P+ A P A+  AG+    +   +++EAFA   LAN K+                   ++ DK NV GG++A GHP   +GAR++  +L  LR++                +A+V+E+
Sbjct:  255 KLRPAFDRKYGTVTAANSTPLTDGAAAVILMRESVAKALGTKPLGYLRSYAFSAIDVWQDMLLGPSYATPIALDRAGITLKDLTLIDMHEAFAAQTLANLKMFASDEFARNKLGRAQAIGEVDMDKFNVLGGSIAYGHPFAATGARMVTQVLNELRRRGGGLGLTTACAAGGLGTAMVLEV 435          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_ALTMD (3-ketoacyl-CoA thiolase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=fadI PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.069e-16
Identity = 54/180 (30.00%), Postives = 89/180 (49.44%), Query Frame = -2
Query:  202 KLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAA-QAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVE 687
            KLRP F +  G+VTA NA+ ++DGA+A+++++  +  +LG   +  I  YA AA    E     P+ A P A+  AG+  + +   E++EAFA   LAN K+                   ++ DK NV G ++A GHP   +G R++  +L  L ++                +A++VE
Sbjct:  255 KLRPVFDKKYGSVTAANATPLTDGASAVLMMTESRAKELGYTPLGYIKSYAFAAIDVWEDMLMGPSYATPIALDRAGMTLNDLTLIEMHEAFAAQTLANVKMFASDKFAKEKLGRDKATGEIDMDKFNVMGSSIAYGHPFAATGTRMITQMLNELNRRGGGSGLLTACAAGGLGAAMIVE 434          
The following BLAST results are available for this feature:
BLAST of CB304629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
FADI_YERPN8.182e-1728.653-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Ant... [more]
FADI_YERPG8.182e-1728.653-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Ant... [more]
FADI_YERPE8.182e-1728.653-ketoacyl-CoA thiolase OS=Yersinia pestis GN=fadI... [more]
FADI_YERPB8.182e-1728.653-ketoacyl-CoA thiolase OS=Yersinia pseudotubercul... [more]
FADI_YERPA8.182e-1728.653-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Ant... [more]
FADI_YERP38.182e-1728.653-ketoacyl-CoA thiolase OS=Yersinia pseudotubercul... [more]
FADI_AERS48.182e-1732.933-ketoacyl-CoA thiolase OS=Aeromonas salmonicida (... [more]
FADI_AERHH8.182e-1732.933-ketoacyl-CoA thiolase OS=Aeromonas hydrophila su... [more]
FADI_PHOLL1.069e-1629.833-ketoacyl-CoA thiolase OS=Photorhabdus luminescen... [more]
FADI_ALTMD1.069e-1630.003-ketoacyl-CoA thiolase OS=Alteromonas macleodii (... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_F05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_F05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304629 ID=CB304629; Name=CB304629; organism=Citrus sinensis; type=EST; length=718bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAGCAAAGCCAGCCAGATA
ATTATTATCTTTTTATTGAAGACGAAAGCACATATGAATAAGAAATGGAG
ATACAATTGCACAACACCCCACCCAAATGGGCCATAATTATCCTCCACAA
GAAGGGTGCAACCTCGTTGATAATAATCCGAACAGAAAATGCTTACACAA
GCTCTACAACAAGTGCCGATGCACCTCCTCCTCCGTTGCAAACGCCACCA
ACACCGTATTTCCAGTTTTTCTGCCTAAGTACCCCCAAAAGTGTGACCAA
GATACGAGCTCCGCTGCAGCCCAGAGGATGTCCCAAAGCTACTGCTCCAC
CATGGACATTAACCTTGTCAGGATTTAGTCCAAGCAATTTCTGGTTTGCA
AGGGCGACGACAGCAAAGGCCTCATTTATTTCGTAACAGTCAACTTGAGA
AGCCTCCAAGCCAGCATTTGAAATGGCTTTAGGTATGGCTAGGGCTGGAG
CTGTTGTAAACATCTCTGGTGCCTGAGCAGCATCAGCATATCCTGTGATC
TTGGCGATCACTTGCAAACCCAGCTTAAGTACCTTCTCTCCACTGACTAG
AACTAATGCTGTAGCTCCATCACTTATACTAGAGGCATTGCCAGCCGTAA
CAGTTCCTCCATTCTCCTTGAAACTTGGTCGAAGCTTCCTCAATTTTGCC
GGGTCAAACTTGCCTAAA
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