CB304629

Overview
NameCB304629
Unique NameCB304629
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_SHELP (3-ketoacyl-CoA thiolase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=fadI PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.396e-16
Identity = 53/181 (29.28%), Postives = 89/181 (49.17%), Query Frame = -2
Query:  199 KLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVEL 687
            KLRP+F    G+VTA N++ ++DGA+A++L+S  +   LG + I  I  YA  A    +     P+ A P A+  AG+E   +   E++EAFA   LAN ++                   ++  K NV GG++A GHP   +G R++  +   L+++                +A++VE+
Sbjct:  255 KLRPAFDRKHGSVTAANSTPLTDGASAVLLMSESRAKALGYEPIGYIKSYAFSAIDVWQDMLMGPSYATPLALKRAGMELEDLTLIEMHEAFAAQTLANMQMFASKKFAKEKLGRDRAIGEIDMTKFNVLGGSLAYGHPFAATGTRLITQVCRELKRRGGGTGLATACAAGGLGAAMIVEV 435          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_PSEA6 (3-ketoacyl-CoA thiolase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=fadI PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.823e-16
Identity = 55/180 (30.56%), Postives = 88/180 (48.89%), Query Frame = -2
Query:  202 KLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAA-QAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVE 687
            KLRP F +  GTVTA NA+ ++DGA+A+++++  +   LG   +  I  YA AA    E     P+ A P A+  AG+  + +   E++EAFA   LAN K+                   ++  K NV G ++A GHP   +G R++  +L  L ++               A+A++VE
Sbjct:  255 KLRPVFDKKHGTVTAANATPLTDGASAVLMMTESRAKALGYTPLGYIKSYAFAAIDVWEDMLMGPSYATPMALDRAGMTLNDLTLIEMHEAFAAQTLANIKMFASDKFAQEKLGRSKATGEIDMAKFNVMGSSLAYGHPFAATGTRMITQMLNELNRRGGGSGLLTACAAGGLAAAMIVE 434          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADI_SHEHH (3-ketoacyl-CoA thiolase OS=Shewanella halifaxensis (strain HAW-EB4) GN=fadI PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.926e-16
Identity = 53/181 (29.28%), Postives = 88/181 (48.62%), Query Frame = -2
Query:  199 KLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYA-DAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG-----------------LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVEL 687
            KLRP+F    G+VTA N++ ++DGA+A++L+S  +   LG   I  I  YA  A    +     P+ A P A+  AG+E   +   E++EAFA   LAN ++                   ++  K NV GG++A GHP   +G R++  +   L+++                +A++VE+
Sbjct:  255 KLRPAFDRKHGSVTAANSTPLTDGASAVLLMSEGRAKALGYTPIGYIKSYAFTAIDVWQDMLMGPSYATPLALKRAGMELEDLTLIEMHEAFAAQTLANMQMFASKKFAEEKLGRNRAIGEIDMSKFNVLGGSLAYGHPFAATGTRLVTQVCHELKRRGGGTGLATACAAGGLGAAMIVEV 435          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: VRAB_STAES (Putative acetyl-CoA C-acetyltransferase vraB OS=Staphylococcus epidermidis (strain ATCC 12228) GN=vraB PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.437e-15
Identity = 45/141 (31.91%), Postives = 74/141 (52.48%), Query Frame = -2
Query:  271 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 693
            L +L+P   E  GTVT GN+   +DGA  L+++   +  +LG     K    A     P+     P  A+ + ++   L  + ++  E+NEAF+   +A+Q+ L +  +K+N  GGA+A GHP G SGA ++  L  +  Q
Sbjct:  219 LGRLKPLLNE--GTVTVGNSCKKNDGAVLLIVMEENRARQLGFTEGIKFVNSATVGVQPQYLGVGPVPAVNQLLAQERLTINDINAVELNEAFSSQVIASQQQLNIPLNKLNCWGGAIATGHPYGASGAALVTRLFYMKHQ 357          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: VRAB_STAEQ (Putative acetyl-CoA C-acetyltransferase vraB OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=vraB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.489e-15
Identity = 45/141 (31.91%), Postives = 74/141 (52.48%), Query Frame = -2
Query:  271 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 693
            L +L+P   E  GTVT GN+   +DGA  L+++   +  +LG     K    A     P+     P  A+ + ++   L  + ++  E+NEAF+   +A+Q+ L +  +K+N  GGA+A GHP G SGA ++  L  +  Q
Sbjct:  219 LGRLKPLLNE--GTVTVGNSCMKNDGAVLLIVMEENRARQLGFTEGIKFVNSATVGVQPQYLGVGPVPAVNQLLARERLTINDINAVELNEAFSSQVIASQQQLNIPLNKLNCWGGAIATGHPYGASGAALVTRLFYMKHQ 357          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: VRAB_STAHJ (Putative acetyl-CoA C-acetyltransferase vraB OS=Staphylococcus haemolyticus (strain JCSC1435) GN=vraB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.910e-14
Identity = 48/148 (32.43%), Postives = 72/148 (48.65%), Query Frame = -2
Query:  256 AKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 699
            A+L +LRP      GTVT GN+   +DGA   +++  E  + +G++              P +    P  A+ + +    L    +   E+NEAF+   LA+   L L  DKVN  GGA+A GHP   SGA ++  LL +    NW+Y
Sbjct:  217 ARLHRLRPILPN--GTVTVGNSCMKNDGAGIALIMEKEMAVAMGIKWGMLYRDAVTTGVDPTLLGIGPVPAVSQLLKRQKLNIEDISAIELNEAFSSQVLASINELHLGLDKVNQWGGAIATGHPYSASGAALVARLLNL---PNWQY 359          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: VRAB_STAAW (Putative acetyl-CoA C-acetyltransferase vraB OS=Staphylococcus aureus (strain MW2) GN=vraB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.306e-11
Identity = 41/133 (30.83%), Postives = 66/133 (49.62%), Query Frame = -2
Query:  289 KLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTL 687
            + +P  K  GGTVTA N+   +DGA  L+++  +   +LG +                     P  AI   +    L    ++  EINEAF+   +A Q+ L ++  ++N+ GGA+A GHP G SGA+++  L
Sbjct:  221 RFKPVIK--GGTVTAANSCMKNDGAVLLLIMEKDMAYELGFEHGLLFKDGVTVGVDSNFPGIGPVPAISNLLKRNQLTIENIEVIEINEAFSAQVVACQQALNISNTQLNIWGGALASGHPYGASGAQLVTRL 351          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: VRAB_STAAS (Putative acetyl-CoA C-acetyltransferase vraB OS=Staphylococcus aureus (strain MSSA476) GN=vraB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.306e-11
Identity = 41/133 (30.83%), Postives = 66/133 (49.62%), Query Frame = -2
Query:  289 KLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTL 687
            + +P  K  GGTVTA N+   +DGA  L+++  +   +LG +                     P  AI   +    L    ++  EINEAF+   +A Q+ L ++  ++N+ GGA+A GHP G SGA+++  L
Sbjct:  221 RFKPVIK--GGTVTAANSCMKNDGAVLLLIMEKDMAYELGFEHGLLFKDGVTVGVDSNFPGIGPVPAISNLLKRNQLTIENIEVIEINEAFSAQVVACQQALNISNTQLNIWGGALASGHPYGASGAQLVTRL 351          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: VRAB_STAAR (Putative acetyl-CoA C-acetyltransferase vraB OS=Staphylococcus aureus (strain MRSA252) GN=vraB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.306e-11
Identity = 41/133 (30.83%), Postives = 66/133 (49.62%), Query Frame = -2
Query:  289 KLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTL 687
            + +P  K  GGTVTA N+   +DGA  L+++  +   +LG                  +    P  AI   +    L    ++  EINEAF+   +A Q+ L ++  ++N+ GGA+A GHP G SGA+++  L
Sbjct:  221 RFKPVIK--GGTVTAANSCMKNDGAVLLLIMEKDMAYELGFDHGLLFKDGVTVGVDSNLPGIGPVPAISNLLKRNQLTIENIEVIEINEAFSAQVVACQQALNISNTQLNIWGGALASGHPYGASGAQLVTRL 351          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: VRAB_STAAN (Putative acetyl-CoA C-acetyltransferase vraB OS=Staphylococcus aureus (strain N315) GN=vraB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.306e-11
Identity = 41/133 (30.83%), Postives = 66/133 (49.62%), Query Frame = -2
Query:  289 KLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTL 687
            + +P  K  GGTVTA N+   +DGA  L+++  +   +LG +                     P  AI   +    L    ++  EINEAF+   +A Q+ L ++  ++N+ GGA+A GHP G SGA+++  L
Sbjct:  221 RFKPVIK--GGTVTAANSCMKNDGAVLLLIMEKDMAYELGFEHGLLFKDGVTVGVDSNFPGIGPVPAISNLLKRNQLTIENIEVIEINEAFSAQVVACQQALNISNTQLNIWGGALASGHPYGASGAQLVTRL 351          
The following BLAST results are available for this feature:
BLAST of CB304629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
FADI_SHELP1.396e-1629.283-ketoacyl-CoA thiolase OS=Shewanella loihica (str... [more]
FADI_PSEA61.823e-1630.563-ketoacyl-CoA thiolase OS=Pseudoalteromonas atlan... [more]
FADI_SHEHH6.926e-1629.283-ketoacyl-CoA thiolase OS=Shewanella halifaxensis... [more]
VRAB_STAES3.437e-1531.91Putative acetyl-CoA C-acetyltransferase vraB OS=St... [more]
VRAB_STAEQ4.489e-1531.91Putative acetyl-CoA C-acetyltransferase vraB OS=St... [more]
VRAB_STAHJ2.910e-1432.43Putative acetyl-CoA C-acetyltransferase vraB OS=St... [more]
VRAB_STAAW2.306e-1130.83Putative acetyl-CoA C-acetyltransferase vraB OS=St... [more]
VRAB_STAAS2.306e-1130.83Putative acetyl-CoA C-acetyltransferase vraB OS=St... [more]
VRAB_STAAR2.306e-1130.83Putative acetyl-CoA C-acetyltransferase vraB OS=St... [more]
VRAB_STAAN2.306e-1130.83Putative acetyl-CoA C-acetyltransferase vraB OS=St... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_F05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_F05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304629 ID=CB304629; Name=CB304629; organism=Citrus sinensis; type=EST; length=718bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAGCAAAGCCAGCCAGATA
ATTATTATCTTTTTATTGAAGACGAAAGCACATATGAATAAGAAATGGAG
ATACAATTGCACAACACCCCACCCAAATGGGCCATAATTATCCTCCACAA
GAAGGGTGCAACCTCGTTGATAATAATCCGAACAGAAAATGCTTACACAA
GCTCTACAACAAGTGCCGATGCACCTCCTCCTCCGTTGCAAACGCCACCA
ACACCGTATTTCCAGTTTTTCTGCCTAAGTACCCCCAAAAGTGTGACCAA
GATACGAGCTCCGCTGCAGCCCAGAGGATGTCCCAAAGCTACTGCTCCAC
CATGGACATTAACCTTGTCAGGATTTAGTCCAAGCAATTTCTGGTTTGCA
AGGGCGACGACAGCAAAGGCCTCATTTATTTCGTAACAGTCAACTTGAGA
AGCCTCCAAGCCAGCATTTGAAATGGCTTTAGGTATGGCTAGGGCTGGAG
CTGTTGTAAACATCTCTGGTGCCTGAGCAGCATCAGCATATCCTGTGATC
TTGGCGATCACTTGCAAACCCAGCTTAAGTACCTTCTCTCCACTGACTAG
AACTAATGCTGTAGCTCCATCACTTATACTAGAGGCATTGCCAGCCGTAA
CAGTTCCTCCATTCTCCTTGAAACTTGGTCGAAGCTTCCTCAATTTTGCC
GGGTCAAACTTGCCTAAA
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