CB304629

Overview
NameCB304629
Unique NameCB304629
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13509 contig Csv1_Contig13509:1..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: VRAB_STAAM (Putative acetyl-CoA C-acetyltransferase vraB OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=vraB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.306e-11
Identity = 41/133 (30.83%), Postives = 66/133 (49.62%), Query Frame = -2 
Query:  289 KLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTL 687
            + +P  K  GGTVTA N+   +DGA  L+++  +   +LG +                     P  AI   +    L    ++  EINEAF+   +A Q+ L ++  ++N+ GGA+A GHP G SGA+++  L
Sbjct:  221 RFKPVIK--GGTVTAANSCMKNDGAVLLLIMEKDMAYELGFEHGLLFKDGVTVGVDSNFPGIGPVPAISNLLKRNQLTIENIEVIEINEAFSAQVVACQQALNISNTQLNIWGGALASGHPYGASGAQLVTRL 351
[Close]
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: VRAB_STAAC (Putative acetyl-CoA C-acetyltransferase vraB OS=Staphylococcus aureus (strain COL) GN=vraB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.306e-11
Identity = 41/133 (30.83%), Postives = 66/133 (49.62%), Query Frame = -2 
Query:  289 KLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTL 687
            + +P  K  GGTVTA N+   +DGA  L+++  +   +LG +                     P  AI   +    L    ++  EINEAF+   +A Q+ L ++  ++N+ GGA+A GHP G SGA+++  L
Sbjct:  221 RFKPVIK--GGTVTAANSCMKNDGAVLLLIMEKDMAYELGFEHGLLFKDGVTVGVDSNFPGIGPVPAISNLLKRNQLTIENIEVIEINEAFSAQVVACQQALNISNTQLNIWGGALASGHPYGASGAQLVTRL 351
[Close]
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: VRAB_STAA1 (Putative acetyl-CoA C-acetyltransferase vraB OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=vraB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.306e-11
Identity = 41/133 (30.83%), Postives = 66/133 (49.62%), Query Frame = -2 
Query:  289 KLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTL 687
            + +P  K  GGTVTA N+   +DGA  L+++  +   +LG +                     P  AI   +    L    ++  EINEAF+   +A Q+ L ++  ++N+ GGA+A GHP G SGA+++  L
Sbjct:  221 RFKPVIK--GGTVTAANSCMKNDGAVLLLIMEKDMAYELGFEHGLLFKDGVTVGVDSNFPGIGPVPAISNLLKRNQLTIENIEVIEINEAFSAQVVACQQALNISNTQLNIWGGALASGHPYGASGAQLVTRL 351
The following BLAST results are available for this feature:
BLAST of CB304629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
VRAB_STAAM2.306e-1130.83Putative acetyl-CoA C-acetyltransferase vraB OS=St... [more]
VRAB_STAAC2.306e-1130.83Putative acetyl-CoA C-acetyltransferase vraB OS=St... [more]
VRAB_STAA12.306e-1130.83Putative acetyl-CoA C-acetyltransferase vraB OS=St... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_F05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_F05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304629 ID=CB304629; Name=CB304629; organism=Citrus sinensis; type=EST; length=718bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAGCAAAGCCAGCCAGATA
ATTATTATCTTTTTATTGAAGACGAAAGCACATATGAATAAGAAATGGAG
ATACAATTGCACAACACCCCACCCAAATGGGCCATAATTATCCTCCACAA
GAAGGGTGCAACCTCGTTGATAATAATCCGAACAGAAAATGCTTACACAA
GCTCTACAACAAGTGCCGATGCACCTCCTCCTCCGTTGCAAACGCCACCA
ACACCGTATTTCCAGTTTTTCTGCCTAAGTACCCCCAAAAGTGTGACCAA
GATACGAGCTCCGCTGCAGCCCAGAGGATGTCCCAAAGCTACTGCTCCAC
CATGGACATTAACCTTGTCAGGATTTAGTCCAAGCAATTTCTGGTTTGCA
AGGGCGACGACAGCAAAGGCCTCATTTATTTCGTAACAGTCAACTTGAGA
AGCCTCCAAGCCAGCATTTGAAATGGCTTTAGGTATGGCTAGGGCTGGAG
CTGTTGTAAACATCTCTGGTGCCTGAGCAGCATCAGCATATCCTGTGATC
TTGGCGATCACTTGCAAACCCAGCTTAAGTACCTTCTCTCCACTGACTAG
AACTAATGCTGTAGCTCCATCACTTATACTAGAGGCATTGCCAGCCGTAA
CAGTTCCTCCATTCTCCTTGAAACTTGGTCGAAGCTTCCTCAATTTTGCC
GGGTCAAACTTGCCTAAA
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