CB304629

Overview
NameCB304629
Unique NameCB304629
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: THLA_STAEQ (Probable acetyl-CoA acyltransferase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP0032 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.589e-28
Identity = 67/137 (48.91%), Postives = 95/137 (69.34%), Query Frame = -2
Query:  286 KLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLL 696
            KL +LRP+FK++G +VTAGNAS I+DGA A+++++ +K   LGLQ IA +  +  +  AP +    P  AI KA+  +    + VD +E+NEAFA  ++A  + L L  DKVNV+GGA+ALGHP+G SGAR LV+LL
Sbjct:  228 KLAQLRPAFKKDG-SVTAGNASGINDGAAAMLVMTEDKAKALGLQPIAVLDSFGASGVAPSIMGIGPVEAIHKALKRSNKVINDVDIFELNEAFAAQSIAVNRELQLPQDKVNVNGGAIALGHPIGASGARTLVSLL 363          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: THIK2_ARATH (3-ketoacyl-CoA thiolase 2, peroxisomal OS=Arabidopsis thaliana GN=PED1 PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.589e-28
Identity = 65/144 (45.14%), Postives = 96/144 (66.67%), Query Frame = -2
Query:  268 AKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQK 699
            A L KL+P FK++G T TAGN+S +SDGA A++L+     ++ GL V+     +A     P +    PA+AIP A+  AGLE   +D +EINEAFA   +  +  LGL+P+K+NV+GGA+A+GHPLG +GAR + TLL  ++++
Sbjct:  271 ASLGKLKPVFKKDG-TTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFRTFAAVGVDPAIMGIGPAVAIPAAVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGAMAIGHPLGATGARCVATLLHEMKRR 413          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_PSEAE (3-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa GN=fadA PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.589e-28
Identity = 67/144 (46.53%), Postives = 93/144 (64.58%), Query Frame = -2
Query:  271 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVA---LANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 693
            L +L+P+F   GGTVTAG +S I+DGA+ ++++S ++   LG+Q +A I   A A   P +    P  +  KA+  AGL  + +D  E+NEAFA  A   L + KLL    +KVN+HGGA+ALGHP GCSGARI  TLL V++Q
Sbjct:  223 LAELKPAFNPKGGTVTAGTSSQITDGASCMIVMSAQRAQDLGIQPMAVIRSMAVAGVDPAIMGYGPVPSTNKALKRAGLTIADIDFVELNEAFAAQALPVLKDLKLLDKMDEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQ 366          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_PSEAB (3-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=fadA PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.589e-28
Identity = 67/144 (46.53%), Postives = 93/144 (64.58%), Query Frame = -2
Query:  271 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVA---LANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 693
            L +L+P+F   GGTVTAG +S I+DGA+ ++++S ++   LG+Q +A I   A A   P +    P  +  KA+  AGL  + +D  E+NEAFA  A   L + KLL    +KVN+HGGA+ALGHP GCSGARI  TLL V++Q
Sbjct:  223 LAQLKPAFNPKGGTVTAGTSSQITDGASCMIVMSAQRAQDLGIQPMAVIRSMAVAGVDPAIMGYGPVPSTNKALKRAGLTIADIDFVELNEAFAAQALPVLKDLKLLDKMDEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQ 366          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_PSEA7 (3-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa (strain PA7) GN=fadA PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.589e-28
Identity = 67/144 (46.53%), Postives = 93/144 (64.58%), Query Frame = -2
Query:  271 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVA---LANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 693
            L +L+P+F   GGTVTAG +S I+DGA+ ++++S ++   LG+Q +A I   A A   P +    P  +  KA+  AGL  + +D  E+NEAFA  A   L + KLL    +KVN+HGGA+ALGHP GCSGARI  TLL V++Q
Sbjct:  223 LAQLKPAFNPKGGTVTAGTSSQITDGASCMIVMSAQRAQDLGIQPMAVIRSMAVAGVDPAIMGYGPVPSTNKALKRAGLTIADIDFVELNEAFAAQALPVLKDLKLLDKMDEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQ 366          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_PSEU5 (3-ketoacyl-CoA thiolase OS=Pseudomonas stutzeri (strain A1501) GN=fadA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.076e-28
Identity = 67/146 (45.89%), Postives = 92/146 (63.01%), Query Frame = -2
Query:  265 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVA---LANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKN 693
            L +L+P+F   GGTVTAG +S I+DGA+ ++++S ++   LGLQ +A +   A A   P +    P  +  KA+  AGL    +   E+NEAFA  A   L + KLL    +KVN+HGGA+ALGHP GCSGARI  TLL V++Q N
Sbjct:  223 LAELKPAFNPKGGTVTAGTSSQITDGASCMIVMSAQRAKDLGLQPMAVVRAMALAGVDPAIMGYGPVPSTQKALKRAGLTMDDISHVELNEAFAAQALPVLKDLKLLDKMEEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQNN 368          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_PSEFR (3-ketoacyl-CoA thiolase OS=Pseudomonas fragi GN=fadA PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.076e-28
Identity = 67/144 (46.53%), Postives = 92/144 (63.89%), Query Frame = -2
Query:  271 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVA---LANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 693
            L  L+P+F   GGTVTAG +S I+DGA+ ++++S ++   LGL+ +A I   A A   P +    P  A  KA+  AGL  + +D  E+NEAFA  A   L + K+L    +KVN+HGGA+ALGHP GCSGARI  TLL V++Q
Sbjct:  223 LAALKPAFNPKGGTVTAGTSSQITDGASCMIVMSAQRAKDLGLEPLAVIRSMAVAGVDPAIMGYGPVPATQKALKRAGLNMADIDFIELNEAFAAQALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQ 366          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_PSE14 (3-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=fadA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.076e-28
Identity = 67/144 (46.53%), Postives = 92/144 (63.89%), Query Frame = -2
Query:  271 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVA---LANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 693
            L  L+P+F   GGTVTAG +S I+DGA+ ++++S ++   LG+Q +A I   A A   P +    P  A  KA+  AGL  + +D  E+NEAFA  A   L + K+L    +KVN+HGGA+ALGHP GCSGARI  TLL V++Q
Sbjct:  223 LAALKPAFNPKGGTVTAGTSSQITDGASCMIVMSAQRAQDLGIQPLAVIRSMAVAGVDPAIMGYGPVPATQKALKRAGLTIADIDFIELNEAFAAQALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQ 366          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_PSEMY (3-ketoacyl-CoA thiolase OS=Pseudomonas mendocina (strain ymp) GN=fadA PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.711e-28
Identity = 66/144 (45.83%), Postives = 92/144 (63.89%), Query Frame = -2
Query:  271 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVA---LANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 693
            L  L+P+F   GGTVTAG +S I+DGA+ ++++S ++   LG+Q +A +   A A   P +    P  +  KA+  AGL  + +D  E+NEAFA  A   L + KLL    +KVN+HGGA+ALGHP GCSGARI  TLL V++Q
Sbjct:  223 LATLKPAFNPKGGTVTAGTSSQITDGASCMIVMSAQRAQDLGIQPMAVVRAMAVAGVDPAIMGYGPVPSTQKALKRAGLTMADIDFVELNEAFAAQALPVLKDLKLLDKMEEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQ 366          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_BACSU (3-ketoacyl-CoA thiolase OS=Bacillus subtilis GN=fadA PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.711e-28
Identity = 67/165 (40.61%), Postives = 102/165 (61.82%), Query Frame = -2
Query:  199 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVEL 693
            L  LRP+F  +G TVTAGN+S  SDGA A++L+  EK   LGL  + K   +A     PE+    P  AIP+A+  AGL+   +  +E+NEAFA  A+   + LG++ +KVNV+GGA+ALGHPLGC+G ++ ++L+  ++++N ++            +A V EL
Sbjct:  227 LSTLRPAFSVDG-TVTAGNSSQTSDGAAAVMLMDREKADALGLAPLVKFRSFAVGGVPPEVMGIGPVEAIPRALKLAGLQLQDIGLFELNEAFASQAIQVIRELGIDEEKVNVNGGAIALGHPLGCTGTKLTLSLIHEMKRRNEQFGVVTMCIGGGMGAAGVFEL 390          
The following BLAST results are available for this feature:
BLAST of CB304629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
THLA_STAEQ1.589e-2848.91Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
THIK2_ARATH1.589e-2845.143-ketoacyl-CoA thiolase 2, peroxisomal OS=Arabidop... [more]
FADA_PSEAE1.589e-2846.533-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa ... [more]
FADA_PSEAB1.589e-2846.533-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa ... [more]
FADA_PSEA71.589e-2846.533-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa ... [more]
FADA_PSEU52.076e-2845.893-ketoacyl-CoA thiolase OS=Pseudomonas stutzeri (s... [more]
FADA_PSEFR2.076e-2846.533-ketoacyl-CoA thiolase OS=Pseudomonas fragi GN=fa... [more]
FADA_PSE142.076e-2846.533-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv... [more]
FADA_PSEMY2.711e-2845.833-ketoacyl-CoA thiolase OS=Pseudomonas mendocina (... [more]
FADA_BACSU2.711e-2840.613-ketoacyl-CoA thiolase OS=Bacillus subtilis GN=fa... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_F05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_F05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304629 ID=CB304629; Name=CB304629; organism=Citrus sinensis; type=EST; length=718bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAGCAAAGCCAGCCAGATA
ATTATTATCTTTTTATTGAAGACGAAAGCACATATGAATAAGAAATGGAG
ATACAATTGCACAACACCCCACCCAAATGGGCCATAATTATCCTCCACAA
GAAGGGTGCAACCTCGTTGATAATAATCCGAACAGAAAATGCTTACACAA
GCTCTACAACAAGTGCCGATGCACCTCCTCCTCCGTTGCAAACGCCACCA
ACACCGTATTTCCAGTTTTTCTGCCTAAGTACCCCCAAAAGTGTGACCAA
GATACGAGCTCCGCTGCAGCCCAGAGGATGTCCCAAAGCTACTGCTCCAC
CATGGACATTAACCTTGTCAGGATTTAGTCCAAGCAATTTCTGGTTTGCA
AGGGCGACGACAGCAAAGGCCTCATTTATTTCGTAACAGTCAACTTGAGA
AGCCTCCAAGCCAGCATTTGAAATGGCTTTAGGTATGGCTAGGGCTGGAG
CTGTTGTAAACATCTCTGGTGCCTGAGCAGCATCAGCATATCCTGTGATC
TTGGCGATCACTTGCAAACCCAGCTTAAGTACCTTCTCTCCACTGACTAG
AACTAATGCTGTAGCTCCATCACTTATACTAGAGGCATTGCCAGCCGTAA
CAGTTCCTCCATTCTCCTTGAAACTTGGTCGAAGCTTCCTCAATTTTGCC
GGGTCAAACTTGCCTAAA
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