CB304629

Overview
NameCB304629
Unique NameCB304629
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: THIC_RAT (Acetyl-CoA acetyltransferase, cytosolic OS=Rattus norvegicus GN=Acat2 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.541e-28
Identity = 67/142 (47.18%), Postives = 92/142 (64.79%), Query Frame = -2
Query:  271 LRKLRPSFKENG-GTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 693
            + KL+P F  +G GTVT  NAS ++DGA A+VL+   +     L+ +A++  ++ A   P +    P  AI +A++ AG     VD +EINEAFA V+ A  K LGL+P+KVN+ GGA+ALGHPLG SG RILVTLL  L +
Sbjct:  231 MSKLKPYFLTDGTGTVTPANASGMNDGAAAVVLMKKTEAESRMLKPLAQVVSWSQAGVEPSVMGVGPIPAIKQAVAKAGWSLEDVDVFEINEAFAAVSAAIAKELGLSPEKVNIDGGAIALGHPLGASGCRILVTLLHTLER 372          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: THIL_MYCTU (Probable acetyl-CoA acetyltransferase OS=Mycobacterium tuberculosis GN=fadA4 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.039e-28
Identity = 68/133 (51.13%), Postives = 91/133 (68.42%), Query Frame = -2
Query:  301 AKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARI 699
            A L  L+P+F+ +G T+TAG+AS ISDGA A+V+++ EK  +LGL  +A+I  +   A       + PA AI KA+   G+   Q+D  EINEAFA VALA+ + LGLNP  VNV+GGA+A+GHPLG SG RI
Sbjct:  223 AALAGLKPAFRGDG-TITAGSASQISDGAAAVVVMNQEKAQELGLTWLAEIGAHGVVAGPDSTLQSQPANAINKALDREGISVDQLDVVEINEAFAAVALASIRELGLNPQIVNVNGGAIAVGHPLGMSGTRI 354          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: THIL_MYCBO (Probable acetyl-CoA acetyltransferase OS=Mycobacterium bovis GN=fadA4 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.039e-28
Identity = 68/133 (51.13%), Postives = 91/133 (68.42%), Query Frame = -2
Query:  301 AKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARI 699
            A L  L+P+F+ +G T+TAG+AS ISDGA A+V+++ EK  +LGL  +A+I  +   A       + PA AI KA+   G+   Q+D  EINEAFA VALA+ + LGLNP  VNV+GGA+A+GHPLG SG RI
Sbjct:  223 AALAGLKPAFRGDG-TITAGSASQISDGAAAVVVMNQEKAQELGLTWLAEIGAHGVVAGPDSTLQSQPANAINKALDREGISVDQLDVVEINEAFAAVALASIRELGLNPQIVNVNGGAIAVGHPLGMSGTRI 354          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: THIL_RALEH (Acetyl-CoA acetyltransferase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=phbA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.888e-28
Identity = 70/161 (43.48%), Postives = 98/161 (60.87%), Query Frame = -2
Query:  202 LRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVE 684
            L+P+F +  GTVTA NAS ++DGA A+V++S  K  +LGL  +A I  YA+A   P++    P  A  +A+S A      +D  EINEAFA  ALA  + +G +  KVNV+GGA+A+GHP+G SG RILVTLL  +++++ K              AL VE
Sbjct:  232 LKPAF-DKAGTVTAANASGLNDGAAAVVVMSAAKAKELGLTPLATIKSYANAGVDPKVMGMGPVPASKRALSRAEWTPQDLDLMEINEAFAAQALAVHQQMGWDTSKVNVNGGAIAIGHPIGASGCRILVTLLHEMKRRDAKKGLASLCIGGGMGVALAVE 391          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: THIK5_ARATH (3-ketoacyl-CoA thiolase 5, peroxisomal OS=Arabidopsis thaliana GN=KAT5 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 7.888e-28
Identity = 67/144 (46.53%), Postives = 93/144 (64.58%), Query Frame = -2
Query:  268 AKLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQK 699
            A L KL+  FK+NG T TAGNAS ISDGA A++L+     +K GL ++     +A     P +    PA+AIP A   AGL  S +D +EINEAFA   + + K L L+ +KVNV+GGA+A+GHPLG +GAR + TLL  ++++
Sbjct:  272 ADLAKLKTVFKQNGST-TAGNASQISDGAGAVLLMKRSLAMKKGLPILGVFRSFAVTGVEPSVMGIGPAVAIPAATKLAGLNVSDIDLFEINEAFASQYVYSCKKLELDMEKVNVNGGAIAIGHPLGATGARCVATLLHEMKRR 414          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: THIK1_ARATH (3-ketoacyl-CoA thiolase 1, peroxisomal OS=Arabidopsis thaliana GN=KAT1 PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.345e-27
Identity = 63/142 (44.37%), Postives = 95/142 (66.90%), Query Frame = -2
Query:  268 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQK 693
            L KL+P FKE+G T TAGN+S +SDGA A++L+     ++ GL ++     ++     P +    PA+AIP A+  AGLE + VD +EINEAFA   +  +  LGL+ +K+NV+GGA+A+GHPLG +GAR + TLL  ++++
Sbjct:  265 LAKLKPVFKEDG-TTTAGNSSQLSDGAGAVLLMRRNVAMQKGLPILGVFRTFSAVGVDPAIMGVGPAVAIPAAVKAAGLELNDVDLFEINEAFASQFVYCRNKLGLDAEKINVNGGAIAIGHPLGATGARCVATLLHEMKRR 405          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_CHRSD (3-ketoacyl-CoA thiolase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=fadA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.345e-27
Identity = 67/144 (46.53%), Postives = 91/144 (63.19%), Query Frame = -2
Query:  265 KLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLN---PDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKN 687
            KL+P F   GGTVTAG +S++S GA+AL ++S E+   LGL+ +A++     A     +    P  A  KA+ +AGL    +   E+NEAFA  ++   K LGL     D VN+HGGA+ALGHPLGCSGARI  TLL V+RQ++
Sbjct:  225 KLKPVFDPKGGTVTAGTSSALSVGASALAVMSYERAQALGLEPLARVVSTGVAGCDASIMGYGPVPATQKALKSAGLAIDDIQTVELNEAFAAQSIPVLKDLGLRERMDDAVNLHGGAIALGHPLGCSGARICTTLLNVMRQQD 368          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_ALISL (3-ketoacyl-CoA thiolase OS=Aliivibrio salmonicida (strain LFI1238) GN=fadA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.345e-27
Identity = 67/148 (45.27%), Postives = 95/148 (64.19%), Query Frame = -2
Query:  259 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGL---NPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWK 693
            L  LRP+F    GTVTAG++S++SDGA+A++++S EK  +LGL + AKI   A +   P +    P  A  KA+  AGL    +D +E+NEAFA  +L   K LGL     +K+N++GGA+ALGHPLGCSG+RI  TL+  + +   K
Sbjct:  219 LAALRPAFDPANGTVTAGSSSALSDGASAMLIMSEEKANELGLTIRAKIRSMAVSGCDPAIMGYGPVPATKKALKRAGLSIDDIDLFELNEAFAAQSLPCIKDLGLFDVMEEKINLNGGAIALGHPLGCSGSRIATTLINNMERTGAK 366          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_ALCBS (3-ketoacyl-CoA thiolase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=fadA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.757e-27
Identity = 72/169 (42.60%), Postives = 100/169 (59.17%), Query Frame = -2
Query:  196 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVAL---ANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVELV 693
            ++KLRP F    GTVTAG +S++SDGA+A++++S E+   LGL+  AKI   A A     +    P  A  KA++ AGL    +D  E+NEAFA  +L    + KLL    +KVN++GGA+ALGHPLGCSGARI  TLL V+  K+ +              A ++E V
Sbjct:  223 MQKLRPVFDPANGTVTAGTSSALSDGASAMLVMSAERAQALGLKPRAKIRSMAVAGCDAAIMGYGPVPATQKALARAGLTIDDIDYVELNEAFAAQSLPVAKDLKLLDKMEEKVNLNGGAIALGHPLGCSGARITGTLLNVMEWKDGQIGLATMCIGLGQGIATIIERV 391          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: THIM_BOVIN (3-ketoacyl-CoA thiolase, mitochondrial OS=Bos taurus GN=ACAA2 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.295e-27
Identity = 70/165 (42.42%), Postives = 95/165 (57.58%), Query Frame = -2
Query:  202 KLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVE 696
            +L KL P FK+ G TVTAGNAS +SDGA A+++ S + V K     +A+I GY  +   P +    P  AI  A+   GL    +D  E+NEAFA   LA +K L L+P K NV+GGA+ALGHPL  SG+RI   L+  LR++  KY             A+++E
Sbjct:  231 QLNKLPPVFKKEG-TVTAGNASGVSDGAGAVIIASEDAVKKHNFTPLARIVGYFVSGCDPTIMGIGPVPAISGALKKTGLSLKDMDLVEVNEAFAPQYLAVEKSLNLDPSKTNVNGGAIALGHPLAGSGSRITAHLVHELRRRGGKYAVGSACIGGGQGIAVIIE 394          
The following BLAST results are available for this feature:
BLAST of CB304629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
THIC_RAT3.541e-2847.18Acetyl-CoA acetyltransferase, cytosolic OS=Rattus ... [more]
THIL_MYCTU6.039e-2851.13Probable acetyl-CoA acetyltransferase OS=Mycobacte... [more]
THIL_MYCBO6.039e-2851.13Probable acetyl-CoA acetyltransferase OS=Mycobacte... [more]
THIL_RALEH7.888e-2843.48Acetyl-CoA acetyltransferase OS=Ralstonia eutropha... [more]
THIK5_ARATH7.888e-2846.533-ketoacyl-CoA thiolase 5, peroxisomal OS=Arabidop... [more]
THIK1_ARATH1.345e-2744.373-ketoacyl-CoA thiolase 1, peroxisomal OS=Arabidop... [more]
FADA_CHRSD1.345e-2746.533-ketoacyl-CoA thiolase OS=Chromohalobacter salexi... [more]
FADA_ALISL1.345e-2745.273-ketoacyl-CoA thiolase OS=Aliivibrio salmonicida ... [more]
FADA_ALCBS1.757e-2742.603-ketoacyl-CoA thiolase OS=Alcanivorax borkumensis... [more]
THIM_BOVIN2.295e-2742.423-ketoacyl-CoA thiolase, mitochondrial OS=Bos taur... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_F05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_F05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304629 ID=CB304629; Name=CB304629; organism=Citrus sinensis; type=EST; length=718bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAGCAAAGCCAGCCAGATA
ATTATTATCTTTTTATTGAAGACGAAAGCACATATGAATAAGAAATGGAG
ATACAATTGCACAACACCCCACCCAAATGGGCCATAATTATCCTCCACAA
GAAGGGTGCAACCTCGTTGATAATAATCCGAACAGAAAATGCTTACACAA
GCTCTACAACAAGTGCCGATGCACCTCCTCCTCCGTTGCAAACGCCACCA
ACACCGTATTTCCAGTTTTTCTGCCTAAGTACCCCCAAAAGTGTGACCAA
GATACGAGCTCCGCTGCAGCCCAGAGGATGTCCCAAAGCTACTGCTCCAC
CATGGACATTAACCTTGTCAGGATTTAGTCCAAGCAATTTCTGGTTTGCA
AGGGCGACGACAGCAAAGGCCTCATTTATTTCGTAACAGTCAACTTGAGA
AGCCTCCAAGCCAGCATTTGAAATGGCTTTAGGTATGGCTAGGGCTGGAG
CTGTTGTAAACATCTCTGGTGCCTGAGCAGCATCAGCATATCCTGTGATC
TTGGCGATCACTTGCAAACCCAGCTTAAGTACCTTCTCTCCACTGACTAG
AACTAATGCTGTAGCTCCATCACTTATACTAGAGGCATTGCCAGCCGTAA
CAGTTCCTCCATTCTCCTTGAAACTTGGTCGAAGCTTCCTCAATTTTGCC
GGGTCAAACTTGCCTAAA
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