CB304629

Overview
NameCB304629
Unique NameCB304629
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13509 contig Csv1_Contig13509:1..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: THIL_RHIME (Acetyl-CoA acetyltransferase OS=Rhizobium meliloti GN=phbA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.295e-27
Identity = 64/142 (45.07%), Postives = 94/142 (66.20%), Query Frame = -2
Query:  268 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQK 693
            + KLRP+F + G TVTAGNAS ++DGA A +L++  +  + G+Q +A+I  +A A   P++  T P  A  KA+  AG   + ++  E NEAFA  A A  K LG +P  VNV+GGA+A+GHP+G SGAR+L TLL  ++++
Sbjct:  229 IAKLRPAFDKEG-TVTAGNASGLNDGAAAALLMTEAEAARRGIQPLARIVSWATAGVDPQIMGTGPIPASRKALEKAGWSVADIELVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARVLNTLLFEMKRR 369          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: THIL_CHRVI (Acetyl-CoA acetyltransferase OS=Chromatium vinosum GN=phbA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.295e-27
Identity = 68/164 (41.46%), Postives = 101/164 (61.59%), Query Frame = -2
Query:  202 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVE 693
            L KLRP+F ++G +VTAGNAS I+DGA  +V++   K  +LGL+ +A++  +A A   P +  T P  A  K +  AG   + +D  E NEAFA  A++  + +G +  KVNV+GGA+A+GHP+G SGAR+LVTLL  +++++ K              AL VE
Sbjct:  230 LGKLRPAFSKDG-SVTAGNASGINDGAAMVVVMKESKAKELGLKPMARLVAFASAGVDPAIMGTGPIPASTKCLEKAGWTPADLDLIEANEAFAAQAMSVNQDMGWDLSKVNVNGGAIAIGHPIGASGARVLVTLLYEMQKRDAKKGLATLCIGGGQGVALAVE 392          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_PSYCK (3-ketoacyl-CoA thiolase OS=Psychrobacter cryohalolentis (strain K5) GN=fadA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.295e-27
Identity = 69/169 (40.83%), Postives = 99/169 (58.58%), Query Frame = -2
Query:  196 KLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGL--NPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVELV 696
            +++KLRP+F   GGTVTA  +S++SDGA+A++++S +K  +LGL+  A+I   A A     +    P  A  KA+  AG+    +   E+NEAFA   L+  K L L    D VN++GGA+ALGHPLGCSGARI VTLL  + Q + +              A ++E V
Sbjct:  222 QMQKLRPAFDPVGGTVTAATSSALSDGASAMLIMSAQKAKELGLKPRARIRSMAIAGCDAAIMGYGPVPATQKALKRAGMSIDDMQTIELNEAFAAQGLSVLKALNLTDKQDIVNINGGAIALGHPLGCSGARITVTLLNAMEQSDTEIGLATMCIGLGQGIATIIERV 390          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_PSEHT (3-ketoacyl-CoA thiolase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=fadA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.295e-27
Identity = 67/149 (44.97%), Postives = 95/149 (63.76%), Query Frame = -2
Query:  256 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLN---PDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 693
            L KLRP F    GTVTAG +S++SDGA+A++++S  K  +LGL + A+I   A A   P +    P  A  KA++ AG+    +   E+NEAFA  +L   K LGL     +KVN++GGA+ALGHPLGCSG+RI  +L+ ++  KN +Y
Sbjct:  219 LSKLRPVFNPASGTVTAGTSSALSDGASAMLVMSEAKAKELGLPIRARIKAMAVAGCDPSIMGYGPVPASKKALAQAGITIDDLGVVELNEAFAAQSLPVMKDLGLMDVVDEKVNLNGGAIALGHPLGCSGSRISTSLIHLMEDKNVRY 367          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_CITK8 (3-ketoacyl-CoA thiolase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=fadA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.295e-27
Identity = 68/149 (45.64%), Postives = 95/149 (63.76%), Query Frame = -2
Query:  256 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLN---PDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 693
            L  LRP+F    GTVTAG +S++SDGA A++++S  +  +LGLQ  A+I   A     P +    P  A   A+  AGL AS +D +E+NEAFA   L   K LGL     +K+N++GGA+ALGHPLGCSGARI  TLL ++ +K+ ++
Sbjct:  219 LSTLRPAFDPVSGTVTAGTSSALSDGAAAMLVMSESRARELGLQPRARIRSMAVVGCDPSIMGYGPVPASKLALKKAGLAASDIDLFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMERKDAQF 367          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_AERHH (3-ketoacyl-CoA thiolase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=fadA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.997e-27
Identity = 68/146 (46.58%), Postives = 92/146 (63.01%), Query Frame = -2
Query:  265 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLN---PDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKN 693
            L +LRP F    GTVTAG +S++SDGA A++++S ++   LGL   AKI   A A     +    P  A  KA+  AGL    +D +E+NEAFA  +L   K LGL     +KVN++GGA+ALGHPLGCSGARI  TLL ++ +K+
Sbjct:  219 LSQLRPVFDPVNGTVTAGTSSALSDGAAAMLVMSADRAKALGLTPRAKIRAMAVAGCDAAIMGYGPVPATQKALKRAGLTIGDIDLFELNEAFAAQSLPCVKDLGLQDVVDEKVNLNGGAIALGHPLGCSGARISTTLLNLMEEKD 364          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: THIL_MYCLE (Probable acetyl-CoA acetyltransferase OS=Mycobacterium leprae GN=fadA4 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.915e-27
Identity = 69/166 (41.57%), Postives = 99/166 (59.64%), Query Frame = -2
Query:  196 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVELV 693
            L  L+P+F+  GGT+T G+AS ISDGA  +V+++ EK  +LGL  + +I  +   A       + PA AI KA+   G+   Q+D  EINEAFA VALA+ + LG+ P+ VNV+GGA+A+GHPLG SGARI + +   L ++   Y             AL++  V
Sbjct:  229 LAGLKPAFR-CGGTITPGSASQISDGAATVVVMNKEKAQQLGLTWLVEIGAHGVVAGPDSTLQSQPANAIKKAVDREGISVEQLDVVEINEAFAAVALASARELGIAPELVNVNGGAIAVGHPLGMSGARITLHVALELARRGSGYGVAALCGAGGQGDALILRAV 393          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_VIBFM (3-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain MJ11) GN=fadA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.915e-27
Identity = 66/148 (44.59%), Postives = 95/148 (64.19%), Query Frame = -2
Query:  259 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGL---NPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWK 693
            L  LRP+F    GTVTAG++S++SDGA+A++++S EK  +LGL + AK+   A +   P +    P  A  KA+  AGL    ++ +E+NEAFA  +L   K LGL     +KVN++GGA+ALGHPLGCSG+RI  TL+  + +   K
Sbjct:  219 LAALRPAFDPANGTVTAGSSSALSDGASAMLVMSEEKANELGLPIRAKVRSMAVSGCDPSIMGYGPVPATKKALKRAGLSLDDIELFELNEAFAAQSLPCIKDLGLLDVMDEKVNLNGGAIALGHPLGCSGSRIATTLINNMERTGAK 366          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_VIBF1 (3-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=fadA PE=3 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.915e-27
Identity = 66/148 (44.59%), Postives = 95/148 (64.19%), Query Frame = -2
Query:  259 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGL---NPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWK 693
            L  LRP+F    GTVTAG++S++SDGA+A++++S EK  +LGL + AK+   A +   P +    P  A  KA+  AGL    ++ +E+NEAFA  +L   K LGL     +KVN++GGA+ALGHPLGCSG+RI  TL+  + +   K
Sbjct:  219 LAALRPAFDPANGTVTAGSSSALSDGASAMLVMSEEKANELGLPIRAKVRSMAVSGCDPSIMGYGPVPATKKALKRAGLSLDDIELFELNEAFAAQSLPCIKDLGLLDVMDEKVNLNGGAIALGHPLGCSGSRIATTLINNMERTGAK 366          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: THIM_MOUSE (3-ketoacyl-CoA thiolase, mitochondrial OS=Mus musculus GN=Acaa2 PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 5.113e-27
Identity = 69/165 (41.82%), Postives = 97/165 (58.79%), Query Frame = -2
Query:  202 KLRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVE 696
            +L+KL   FK++G TVTAGNAS +SDGA A+++ S + V K     +A++ GY  +   P +    P  AI  A+  AGL    +D  ++NEAFA   L+ QK L L+P K NV GGA+ALGHPLG SG+RI   L+  LR++  KY             AL+++
Sbjct:  231 QLQKLPSVFKKDG-TVTAGNASGVSDGAGAVIIASEDAVKKHNFTPLARVVGYFVSGCDPTIMGIGPVPAINGALKKAGLSLKDMDLIDVNEAFAPQFLSVQKALDLDPSKTNVSGGAIALGHPLGGSGSRITAHLVHELRRRGGKYAVGSACIGGGQGIALIIQ 394          
The following BLAST results are available for this feature:
BLAST of CB304629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
THIL_RHIME2.295e-2745.07Acetyl-CoA acetyltransferase OS=Rhizobium meliloti... [more]
THIL_CHRVI2.295e-2741.46Acetyl-CoA acetyltransferase OS=Chromatium vinosum... [more]
FADA_PSYCK2.295e-2740.833-ketoacyl-CoA thiolase OS=Psychrobacter cryohalol... [more]
FADA_PSEHT2.295e-2744.973-ketoacyl-CoA thiolase OS=Pseudoalteromonas halop... [more]
FADA_CITK82.295e-2745.643-ketoacyl-CoA thiolase OS=Citrobacter koseri (str... [more]
FADA_AERHH2.997e-2746.583-ketoacyl-CoA thiolase OS=Aeromonas hydrophila su... [more]
THIL_MYCLE3.915e-2741.57Probable acetyl-CoA acetyltransferase OS=Mycobacte... [more]
FADA_VIBFM3.915e-2744.593-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain... [more]
FADA_VIBF13.915e-2744.593-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain... [more]
THIM_MOUSE5.113e-2741.823-ketoacyl-CoA thiolase, mitochondrial OS=Mus musc... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_F05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_F05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304629 ID=CB304629; Name=CB304629; organism=Citrus sinensis; type=EST; length=718bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAGCAAAGCCAGCCAGATA
ATTATTATCTTTTTATTGAAGACGAAAGCACATATGAATAAGAAATGGAG
ATACAATTGCACAACACCCCACCCAAATGGGCCATAATTATCCTCCACAA
GAAGGGTGCAACCTCGTTGATAATAATCCGAACAGAAAATGCTTACACAA
GCTCTACAACAAGTGCCGATGCACCTCCTCCTCCGTTGCAAACGCCACCA
ACACCGTATTTCCAGTTTTTCTGCCTAAGTACCCCCAAAAGTGTGACCAA
GATACGAGCTCCGCTGCAGCCCAGAGGATGTCCCAAAGCTACTGCTCCAC
CATGGACATTAACCTTGTCAGGATTTAGTCCAAGCAATTTCTGGTTTGCA
AGGGCGACGACAGCAAAGGCCTCATTTATTTCGTAACAGTCAACTTGAGA
AGCCTCCAAGCCAGCATTTGAAATGGCTTTAGGTATGGCTAGGGCTGGAG
CTGTTGTAAACATCTCTGGTGCCTGAGCAGCATCAGCATATCCTGTGATC
TTGGCGATCACTTGCAAACCCAGCTTAAGTACCTTCTCTCCACTGACTAG
AACTAATGCTGTAGCTCCATCACTTATACTAGAGGCATTGCCAGCCGTAA
CAGTTCCTCCATTCTCCTTGAAACTTGGTCGAAGCTTCCTCAATTTTGCC
GGGTCAAACTTGCCTAAA
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