CB304629

Overview
NameCB304629
Unique NameCB304629
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_YERPS (3-ketoacyl-CoA thiolase OS=Yersinia pseudotuberculosis GN=fadA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.113e-27
Identity = 67/149 (44.97%), Postives = 95/149 (63.76%), Query Frame = -2
Query:  256 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGL---NPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 693
            L  LRP+F    GTVTAG +S++SDGA+A++++S  +   LGL   A+I   A     P +    P  A   A+  AGLE + +  +E+NEAFA  +LA  K LGL     DKVN++GGA+ALGHPLGCSGARI  TLL ++ +++ ++
Sbjct:  219 LAALRPAFDPVNGTVTAGTSSALSDGASAMLIMSESRAKSLGLTPRARIRSMAVVGCDPSIMGYGPVPASQLALKRAGLELADIGLFELNEAFAAQSLACLKGLGLLESMDDKVNLNGGAIALGHPLGCSGARISTTLLNLMERRDVQF 367          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_YERPP (3-ketoacyl-CoA thiolase OS=Yersinia pestis (strain Pestoides F) GN=fadA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.113e-27
Identity = 67/149 (44.97%), Postives = 95/149 (63.76%), Query Frame = -2
Query:  256 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGL---NPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 693
            L  LRP+F    GTVTAG +S++SDGA+A++++S  +   LGL   A+I   A     P +    P  A   A+  AGLE + +  +E+NEAFA  +LA  K LGL     DKVN++GGA+ALGHPLGCSGARI  TLL ++ +++ ++
Sbjct:  219 LAALRPAFDPVNGTVTAGTSSALSDGASAMLIMSESRAKSLGLTPRARIRSMAVVGCDPSIMGYGPVPASQLALKRAGLELADIGLFELNEAFAAQSLACLKGLGLLESMDDKVNLNGGAIALGHPLGCSGARISTTLLNLMERRDVQF 367          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_YERPN (3-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=fadA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.113e-27
Identity = 67/149 (44.97%), Postives = 95/149 (63.76%), Query Frame = -2
Query:  256 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGL---NPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 693
            L  LRP+F    GTVTAG +S++SDGA+A++++S  +   LGL   A+I   A     P +    P  A   A+  AGLE + +  +E+NEAFA  +LA  K LGL     DKVN++GGA+ALGHPLGCSGARI  TLL ++ +++ ++
Sbjct:  219 LAALRPAFDPVNGTVTAGTSSALSDGASAMLIMSESRAKSLGLTPRARIRSMAVVGCDPSIMGYGPVPASQLALKRAGLELADIGLFELNEAFAAQSLACLKGLGLLESMDDKVNLNGGAIALGHPLGCSGARISTTLLNLMERRDVQF 367          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_YERPE (3-ketoacyl-CoA thiolase OS=Yersinia pestis GN=fadA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.113e-27
Identity = 67/149 (44.97%), Postives = 95/149 (63.76%), Query Frame = -2
Query:  256 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGL---NPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 693
            L  LRP+F    GTVTAG +S++SDGA+A++++S  +   LGL   A+I   A     P +    P  A   A+  AGLE + +  +E+NEAFA  +LA  K LGL     DKVN++GGA+ALGHPLGCSGARI  TLL ++ +++ ++
Sbjct:  219 LAALRPAFDPVNGTVTAGTSSALSDGASAMLIMSESRAKSLGLTPRARIRSMAVVGCDPSIMGYGPVPASQLALKRAGLELADIGLFELNEAFAAQSLACLKGLGLLESMDDKVNLNGGAIALGHPLGCSGARISTTLLNLMERRDVQF 367          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_YERPA (3-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=fadA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.113e-27
Identity = 67/149 (44.97%), Postives = 95/149 (63.76%), Query Frame = -2
Query:  256 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGL---NPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 693
            L  LRP+F    GTVTAG +S++SDGA+A++++S  +   LGL   A+I   A     P +    P  A   A+  AGLE + +  +E+NEAFA  +LA  K LGL     DKVN++GGA+ALGHPLGCSGARI  TLL ++ +++ ++
Sbjct:  219 LAALRPAFDPVNGTVTAGTSSALSDGASAMLIMSESRAKSLGLTPRARIRSMAVVGCDPSIMGYGPVPASQLALKRAGLELADIGLFELNEAFAAQSLACLKGLGLLESMDDKVNLNGGAIALGHPLGCSGARISTTLLNLMERRDVQF 367          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_YERP3 (3-ketoacyl-CoA thiolase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=fadA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.113e-27
Identity = 67/149 (44.97%), Postives = 95/149 (63.76%), Query Frame = -2
Query:  256 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGL---NPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 693
            L  LRP+F    GTVTAG +S++SDGA+A++++S  +   LGL   A+I   A     P +    P  A   A+  AGLE + +  +E+NEAFA  +LA  K LGL     DKVN++GGA+ALGHPLGCSGARI  TLL ++ +++ ++
Sbjct:  219 LAALRPAFDPVNGTVTAGTSSALSDGASAMLIMSESRAKSLGLTPRARIRSMAVVGCDPSIMGYGPVPASQLALKRAGLELADIGLFELNEAFAAQSLACLKGLGLLESMDDKVNLNGGAIALGHPLGCSGARISTTLLNLMERRDVQF 367          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_ACIAD (3-ketoacyl-CoA thiolase OS=Acinetobacter sp. (strain ADP1) GN=fadA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.113e-27
Identity = 72/167 (43.11%), Postives = 96/167 (57.49%), Query Frame = -2
Query:  196 RKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGL--NPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVELV 690
            + LRP F   GGTVTA  +S++SDGA+A++L+S E+   LGL+  A I   A A     +    P  A  KA+  AGL  + +   E+NEAFA   L+  K LGL    D VN++GGA+ALGHPLGCSGARI  TLL V+ Q++ +              A V+E V
Sbjct:  224 KALRPVFDPKGGTVTAATSSALSDGASAMLLMSAERAQALGLKPRAVIRSMAVAGCDAAIMGYGPVPATQKALKRAGLSVADIQTVELNEAFAAQGLSVLKGLGLYEKQDIVNLNGGAIALGHPLGCSGARITTTLLNVMEQQDTQIGLATMCIGLGQGIATVIERV 390          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: FADA_IDILO (3-ketoacyl-CoA thiolase OS=Idiomarina loihiensis GN=fadA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.677e-27
Identity = 66/148 (44.59%), Postives = 91/148 (61.49%), Query Frame = -2
Query:  259 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFA---VVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWK 693
            L +LRP F    GTVTAG +S++SDGA A++++S +K  +LGL    KI   A A   P +    P  A  KA+  AG+    +D  E+NEAFA   +  L   KL     +KVN++GGA+ALGHPLGCSGARI  TL+ ++ +K+ K
Sbjct:  219 LSQLRPVFDPANGTVTAGTSSALSDGAAAMLVMSADKAKELGLTPRVKIRSMAVAGCDPSIMGYGPVPATEKALKRAGVSIDDIDVVELNEAFAAQSLPVLKGLKLFDKMEEKVNLNGGAIALGHPLGCSGARISTTLINLMEEKDAK 366          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: THIL_ZOORA (Acetyl-CoA acetyltransferase OS=Zoogloea ramigera GN=phbA PE=1 SV=4)

HSP 1 Score: 120.553 bits (301), Expect = 8.721e-27
Identity = 65/142 (45.77%), Postives = 92/142 (64.79%), Query Frame = -2
Query:  268 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQK 693
            + KLRP+F + G TVTAGNAS ++DGA A +L+S  +  + G+Q + +I  +A     P++  T P  A  KA+  AG +   +D  E NEAFA  A A  K LG +P  VNV+GGA+A+GHP+G SGARIL TLL  ++++
Sbjct:  228 MAKLRPAFDKEG-TVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRR 368          
BLAST of CB304629 vs. ExPASy Swiss-Prot
Match: THIL_PARDE (Acetyl-CoA acetyltransferase OS=Paracoccus denitrificans GN=phaA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.721e-27
Identity = 62/145 (42.76%), Postives = 95/145 (65.52%), Query Frame = -2
Query:  259 LRKLRPSFKENGGTVTAGNASSISDGATALVLVSGEKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWK 693
            +  +RP+F + G TVTAGNAS ++DGA A+++++ ++  + GL  +A+I  YA A   P++  T P  A  KA+  AG     +D  E NEAFA  A+A  + +G +P  VNV+GGA+A+GHP+G SG RIL TLL  +++++ K
Sbjct:  227 MENVRPAFSKEG-TVTAGNASGLNDGAAAVLVMTEDEAARRGLTPLARIASYATAGVDPQIMGTGPIPASRKALEKAGWSVGDLDLVEANEAFAAQAIAVNRDMGWDPSIVNVNGGAIAIGHPIGASGCRILNTLLFEMQRRDAK 370          
The following BLAST results are available for this feature:
BLAST of CB304629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
FADA_YERPS5.113e-2744.973-ketoacyl-CoA thiolase OS=Yersinia pseudotubercul... [more]
FADA_YERPP5.113e-2744.973-ketoacyl-CoA thiolase OS=Yersinia pestis (strain... [more]
FADA_YERPN5.113e-2744.973-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Ant... [more]
FADA_YERPE5.113e-2744.973-ketoacyl-CoA thiolase OS=Yersinia pestis GN=fadA... [more]
FADA_YERPA5.113e-2744.973-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Ant... [more]
FADA_YERP35.113e-2744.973-ketoacyl-CoA thiolase OS=Yersinia pseudotubercul... [more]
FADA_ACIAD5.113e-2743.113-ketoacyl-CoA thiolase OS=Acinetobacter sp. (stra... [more]
FADA_IDILO6.677e-2744.593-ketoacyl-CoA thiolase OS=Idiomarina loihiensis G... [more]
THIL_ZOORA8.721e-2745.77Acetyl-CoA acetyltransferase OS=Zoogloea ramigera ... [more]
THIL_PARDE8.721e-2742.76Acetyl-CoA acetyltransferase OS=Paracoccus denitri... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_F05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_F05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304629 ID=CB304629; Name=CB304629; organism=Citrus sinensis; type=EST; length=718bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAGCAAAGCCAGCCAGATA
ATTATTATCTTTTTATTGAAGACGAAAGCACATATGAATAAGAAATGGAG
ATACAATTGCACAACACCCCACCCAAATGGGCCATAATTATCCTCCACAA
GAAGGGTGCAACCTCGTTGATAATAATCCGAACAGAAAATGCTTACACAA
GCTCTACAACAAGTGCCGATGCACCTCCTCCTCCGTTGCAAACGCCACCA
ACACCGTATTTCCAGTTTTTCTGCCTAAGTACCCCCAAAAGTGTGACCAA
GATACGAGCTCCGCTGCAGCCCAGAGGATGTCCCAAAGCTACTGCTCCAC
CATGGACATTAACCTTGTCAGGATTTAGTCCAAGCAATTTCTGGTTTGCA
AGGGCGACGACAGCAAAGGCCTCATTTATTTCGTAACAGTCAACTTGAGA
AGCCTCCAAGCCAGCATTTGAAATGGCTTTAGGTATGGCTAGGGCTGGAG
CTGTTGTAAACATCTCTGGTGCCTGAGCAGCATCAGCATATCCTGTGATC
TTGGCGATCACTTGCAAACCCAGCTTAAGTACCTTCTCTCCACTGACTAG
AACTAATGCTGTAGCTCCATCACTTATACTAGAGGCATTGCCAGCCGTAA
CAGTTCCTCCATTCTCCTTGAAACTTGGTCGAAGCTTCCTCAATTTTGCC
GGGTCAAACTTGCCTAAA
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