CB304662

Overview
NameCB304662
Unique NameCB304662
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304662_ssr188 microsatellite CB304662_ssr188:188..199. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2668 contig Csv1_Contig2668:267..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSJ (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. japonica GN=LTP PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.330e-25
Identity = 53/92 (57.61%), Postives = 65/92 (70.65%), Query Frame = -1
Query:  255 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 530
            AITCGQV  ++ PC+ + R GG  P   CC+GVRSL  AA T+ DR+ ACNCLK A R I G+NA  AA +P +CGVS+PY IS + DCSRV
Sbjct:   25 AITCGQVNSAVGPCLTYAR-GGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSI (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. indica GN=LTP PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.330e-25
Identity = 53/92 (57.61%), Postives = 65/92 (70.65%), Query Frame = -1
Query:  255 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 530
            AITCGQV  ++ PC+ + R GG  P   CC+GVRSL  AA T+ DR+ ACNCLK A R I G+NA  AA +P +CGVS+PY IS + DCSRV
Sbjct:   25 AITCGQVNSAVGPCLTYAR-GGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLT2B_ORYSJ (Non-specific lipid-transfer protein 2B OS=Oryza sativa subsp. japonica GN=LTP2-B PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.330e-25
Identity = 53/92 (57.61%), Postives = 67/92 (72.83%), Query Frame = -1
Query:  255 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 530
            AI+CGQV  +++PC+++ R GG  P   CC+GVRSLN AA T+ DR+ ACNCLK    SI G+NA  AA +P +CGVSIPY ISP+ DCS V
Sbjct:   26 AISCGQVNSAVSPCLSYAR-GGSGPSAACCSGVRSLNSAATTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 116          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLT2A_ORYSJ (Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica GN=LTP2-A PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 6.330e-25
Identity = 53/92 (57.61%), Postives = 67/92 (72.83%), Query Frame = -1
Query:  255 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 530
            AI+CGQV  +++PC+++ R GG  P   CC+GVRSLN AA T+ DR+ ACNCLK    SI G+NA  AA +P +CGVSIPY ISP+ DCS V
Sbjct:   27 AISCGQVNSAVSPCLSYAR-GGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLTP3_PRUDU (Non-specific lipid-transfer protein 3 OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.268e-25
Identity = 54/95 (56.84%), Postives = 68/95 (71.58%), Query Frame = -1
Query:  252 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINAN--VAAGLPRQCGVSIPYKISPNTDCSRVR 530
            A++CGQV  +L PCI ++  GG   P  CC GVRSL   A+T+ DRQ+ CNCLKQA   IP  NAN  +AAGLP +CGV+IPYKISP+TDC  ++
Sbjct:   30 AVSCGQVVNNLTPCINYVANGGALNPS-CCTGVRSLYSLAQTTADRQSICNCLKQAVNGIPYTNANAGLAAGLPGKCGVNIPYKISPSTDCKSIK 123          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLTP4_ORYSJ (Non-specific lipid-transfer protein 4 OS=Oryza sativa subsp. japonica GN=Os12g0114500 PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.080e-24
Identity = 51/99 (51.52%), Postives = 67/99 (67.68%), Query Frame = -1
Query:  255 VTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 551
            + AP  +A+TCGQV   LAPCI +       P   CC+GVR+LN AA T+ DRQ  C CLKQ   ++ G+  ++ AG+P +CGV+IPY ISP+TDCSRV
Sbjct:   20 LAAPAASAVTCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCGVNIPYAISPSTDCSRV 118          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLTP1_ARATH (Non-specific lipid-transfer protein 1 OS=Arabidopsis thaliana GN=LTP1 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.842e-24
Identity = 53/103 (51.46%), Postives = 75/103 (72.82%), Query Frame = -1
Query:  252 VTAPVTN--AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSI-PGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 551
            V  P+T+  A++CG V  +LA CI ++  GG  PP  CC+GV++LN  A+T+PDRQ ACNC++ A R++  G+NA  AAG+P+ CGV+IPYKIS +T+C  VR
Sbjct:   17 VAGPITSNAALSCGSVNSNLAACIGYVLQGGVIPPA-CCSGVKNLNSIAKTTPDRQQACNCIQGAARALGSGLNAGRAAGIPKACGVNIPYKISTSTNCKTVR 118          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLTPD_BRAOT (Non-specific lipid-transfer protein D OS=Brassica oleracea var. italica GN=WAX9D PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.406e-24
Identity = 53/102 (51.96%), Postives = 69/102 (67.65%), Query Frame = -1
Query:  252 VTAPVTN--AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 551
            V  P+T+  A++CG V+G +APCI +L       P  CC+GV SLN  ART+PDRQ AC CL  A  ++P IN   AAGLP+ CGV+IPYKIS  T+C+ V+
Sbjct:   17 VAGPITSNAALSCGTVSGYVAPCIGYLAQNAPAVPTACCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 118          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLPN (Non-specific lipid-transfer protein 2 OS=Solanum pennellii GN=LTP2 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.406e-24
Identity = 54/100 (54.00%), Postives = 67/100 (67.00%), Query Frame = -1
Query:  252 VTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 551
            V AP   A+TCGQVT +LAPC+ +L   G  P   CC GV+ L G A+T+ DRQ AC CLK A  S  G++   AA LP  C V+IPYKISP+TDCS+V+
Sbjct:   17 VVAPHAEALTCGQVTSTLAPCLPYLMNRG--PLGGCCGGVKGLLGQAQTTVDRQTACTCLKSAASSFTGLDLGKAASLPSTCSVNIPYKISPSTDCSKVQ 114          
BLAST of CB304662 vs. ExPASy Swiss-Prot
Match: NLTP2_BRANA (Non-specific lipid-transfer protein 2 OS=Brassica napus GN=LTP2 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.142e-24
Identity = 55/102 (53.92%), Postives = 70/102 (68.63%), Query Frame = -1
Query:  252 VTAPVTN--AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTSPDRQAACNCLKQAHRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 551
            V  P+T+  A++CG V+G +APCI +L   G  P   CC GV +LN  ART+PDRQ AC CL  A  S P +NA  AAGLP+ CGV+IPYKIS +T+C+ VR
Sbjct:   17 VAGPITSNAALSCGTVSGYVAPCIGYLTQNGPLPRG-CCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
The following BLAST results are available for this feature:
BLAST of CB304662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
NLTP1_ORYSJ6.330e-2557.61Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP1_ORYSI6.330e-2557.61Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLT2B_ORYSJ6.330e-2557.61Non-specific lipid-transfer protein 2B OS=Oryza sa... [more]
NLT2A_ORYSJ6.330e-2557.61Non-specific lipid-transfer protein 2A OS=Oryza sa... [more]
NLTP3_PRUDU8.268e-2556.84Non-specific lipid-transfer protein 3 OS=Prunus du... [more]
NLTP4_ORYSJ1.080e-2451.52Non-specific lipid-transfer protein 4 OS=Oryza sat... [more]
NLTP1_ARATH1.842e-2451.46Non-specific lipid-transfer protein 1 OS=Arabidops... [more]
NLTPD_BRAOT2.406e-2451.96Non-specific lipid-transfer protein D OS=Brassica ... [more]
NLTP2_SOLPN2.406e-2454.00Non-specific lipid-transfer protein 2 OS=Solanum p... [more]
NLTP2_BRANA3.142e-2453.92Non-specific lipid-transfer protein 2 OS=Brassica ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_B04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_B04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304662 ID=CB304662; Name=CB304662; organism=Citrus sinensis; type=EST; length=551bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGATAATACCACAAAATAA
CTAGAATTAATCACTCAAAACACAGATCACGTTTACATATTTAATATGAT
ATTAAAAGCAAAGATACAAACATGACATGAGAGTGAGACTCACACAAGTG
GAGACTCGCTCGGACAAAGAAATTAACATATATATTCTTTATTTATTTAT
TCTTCTCAGTCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTTC
ACCTGACCCTAGAGCAGTCAGTGTTGGGGCTGATCTTGTAAGGAATGCTG
ACTCCACATTGACGAGGAAGGCCAGCGGCAACATTAGCGTTGATGCCGGG
GATTGATCGGTGAGCTTGCTTCAAGCAGTTGCATGCAGCTTGGCGGTCAG
GGGAGGTTCTGGCGGCGCCGTTGAGAGACCTGACGCCGTTACAGCATGGG
GGTGGAGGAAAACGCCCTCCAGTTCTCAAGAAAGCGATGCATGGAGCCAA
GGAGCCTGTCACCTGCCCACATGTTATGGCATTAGTCACTGGGGCAGTCA
C
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