CB304672

Overview
NameCB304672
Unique NameCB304672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length521
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:870..1388. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304672 vs. ExPASy Swiss-Prot
Match: THI4_PYRHO (Putative thiazole biosynthetic enzyme OS=Pyrococcus horikoshii GN=PH1357 PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 8.347e-13
Identity = 39/81 (48.15%), Postives = 49/81 (60.49%), Query Frame = -2
Query:  278 GATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 520
            GA   + L   G+++E+PG  A+     E   V+ TREV PG+ VTGM    I GAPRMGP FG M +SG+KAA   LK L
Sbjct:  170 GAQVAQFLVKRGLLKEIPGEGAMWAEQGEKLTVKNTREVFPGLYVTGMAANAIAGAPRMGPIFGGMFLSGRKAAQEILKKL 250          
BLAST of CB304672 vs. ExPASy Swiss-Prot
Match: THI4_PYRFU (Putative thiazole biosynthetic enzyme OS=Pyrococcus furiosus GN=PF1530 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.860e-12
Identity = 38/82 (46.34%), Postives = 49/82 (59.76%), Query Frame = -2
Query:  275 GATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLG 520
            GA   + L   G+IE++PG  A+     E   V  T+EV PG+ VTGM    + GAPRMGP FG M +SG+KAA   L+ LG
Sbjct:  170 GAQVTQFLLKRGLIEKIPGEGAMWAEMGEKLTVENTKEVFPGLYVTGMAANAVSGAPRMGPIFGGMFLSGRKAAMEILQKLG 251          
BLAST of CB304672 vs. ExPASy Swiss-Prot
Match: THI4_PYRAB (Putative thiazole biosynthetic enzyme OS=Pyrococcus abyssi GN=PYRAB07910 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.143e-12
Identity = 39/81 (48.15%), Postives = 47/81 (58.02%), Query Frame = -2
Query:  278 GATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 520
            GA   + L   G+IE +PG  A+     E   V  TREV PG+ VTGM    I GAPRMGP FG M +SG+KAA   L+ L
Sbjct:  170 GAQVAQFLLKRGLIERIPGEGAMWAEQGERLTVENTREVFPGLYVTGMAANAIAGAPRMGPIFGGMFLSGKKAAQEILEKL 250          
BLAST of CB304672 vs. ExPASy Swiss-Prot
Match: THI4_AERPE (Putative thiazole biosynthetic enzyme OS=Aeropyrum pernix GN=APE_2149.1 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 4.143e-12
Identity = 37/81 (45.68%), Postives = 53/81 (65.43%), Query Frame = -2
Query:  275 ATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLG 517
            A   ++L   GM+E    +  + +  +ED +V  T EV PG++V G+ VAE+ G PRMGPTFGAM++SG+KAA L  + LG
Sbjct:  178 AVVTRKLAERGMVE-ASKLGPMWVERSEDLVVEKTGEVYPGLVVAGIAVAEVYGLPRMGPTFGAMLLSGEKAAALIGEKLG 257          
BLAST of CB304672 vs. ExPASy Swiss-Prot
Match: THI4_HALWD (Putative thiazole biosynthetic enzyme OS=Haloquadratum walsbyi (strain DSM 16790) GN=HQ1276A PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.574e-11
Identity = 31/66 (46.97%), Postives = 46/66 (69.70%), Query Frame = -2
Query:  272 PGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 469
            PG  ++ ++ +ED +V  T  V PG++ TGM VA ++G PRMGPTFGAM++SG++ A   L  LG+
Sbjct:  227 PGHDSMWVSRSEDQVVEHTGVVHPGVVATGMAVATVEGLPRMGPTFGAMLLSGKRGAQACLNELGR 292          
BLAST of CB304672 vs. ExPASy Swiss-Prot
Match: THI4_PYRKO (Putative thiazole biosynthetic enzyme OS=Pyrococcus kodakaraensis GN=TK0434 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.056e-11
Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = -2
Query:  272 GATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 520
            GA   + L   G+I+ +PG   +     E+  V  TREV PG+  TGM    + GAPRMGP FG M++SG+KAA   L+ LG+
Sbjct:  169 GAQISQHLLKRGLIKAIPGEGPMWAEKGEELTVEHTREVFPGLYATGMAANALAGAPRMGPIFGGMLLSGRKAALEILQKLGK 251          
BLAST of CB304672 vs. ExPASy Swiss-Prot
Match: THI4_PYRAR (Putative thiazole biosynthetic enzyme OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=Pars_1498 PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 5.982e-11
Identity = 32/82 (39.02%), Postives = 50/82 (60.98%), Query Frame = -2
Query:  272 ATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 517
            +   +++  +G+  ++PG K+     +E  +V  T +V PG+ VTGM VA + G PRMGP FG MM+SG+K A +  K L +
Sbjct:  175 SVAARKVPELGI--QLPGEKSAWSEVSEKLVVEYTGKVAPGLYVTGMAVAAVHGLPRMGPIFGGMMLSGKKIAEIVAKDLAE 254          
BLAST of CB304672 vs. ExPASy Swiss-Prot
Match: THI4_YEAST (Thiazole biosynthetic enzyme, mitochondrial OS=Saccharomyces cerevisiae GN=THI4 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.813e-11
Identity = 40/81 (49.38%), Postives = 48/81 (59.26%), Query Frame = -2
Query:  284 GATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREV--VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 520
            GA   KR+  I   +++ GMK LDMN AE  +V  +     V  M   GMEVAE+DG  RMGPTFGAM +SG  AA   LK
Sbjct:  242 GAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILK 322          
The following BLAST results are available for this feature:
BLAST of CB304672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
THI4_PYRHO8.347e-1348.15Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRFU1.860e-1246.34Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRAB4.143e-1248.15Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_AERPE4.143e-1245.68Putative thiazole biosynthetic enzyme OS=Aeropyrum... [more]
THI4_HALWD1.574e-1146.97Putative thiazole biosynthetic enzyme OS=Haloquadr... [more]
THI4_PYRKO2.056e-1143.37Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRAR5.982e-1139.02Putative thiazole biosynthetic enzyme OS=Pyrobacul... [more]
THI4_YEAST7.813e-1149.38Thiazole biosynthetic enzyme, mitochondrial OS=Sac... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_C02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_C02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304672 ID=CB304672; Name=CB304672; organism=Citrus sinensis; type=EST; length=521bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAACAAACACTTTATTC
ACAAAACCTCACAACATCATCTCATTATTCGCATCAACCATCCATCACAA
CCACCTAAATACAACTACTTTTTTGCCAGAGTTTATTTGCATGCACACAG
CTGATGAGTGATGATGCCTGTTATTATCAAATTAACCATCAGCAGTCTCA
GCAGAATCAGCTGCAGCTAAGATCAGCTCAGGGTGAGCACCTCCCACATA
TGTACCGTCTAATGCATTCGGCTGGCCCAGTGACTTCAACGCCAAATGCG
CAGCCTTCTGCCCCGATATCATCATTGCTCCAAATGTTGGCCCCATTCTA
GGAGCACCATCAATCTCGGCAACTTCCATGCCGGTAACTATCATACCAGG
CACAACCTCCCTGGTCAGCCTCACAATAGCATCTTCTGCAGAGTTCATGT
CCAGTGCCTTCATTCCAGGCACTTCCTCAATCATTCCGATACTCTTCAAC
CTCTTTACTCCAGTGGCCCCC
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