CB304673
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_THEGJ (30S ribosomal protein S19P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps19p PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 4.921e-28 Identity = 61/119 (51.26%), Postives = 85/119 (71.43%), Query Frame = -1 Query: 284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640 +MS +E KL AR RR +RGL + L++K+R AK+ G+ +P+RTH R+MI++PEM+G I V+NGK F +EIKPEMIGHYL EF+++ K V+HG PG+GAT SS F+ +K Sbjct: 19 NMSLEEFAKLLPARQRRSLKRGLSPEQKKLLRKIRLAKK----GKYNKPIRTHSRDMIVLPEMVGITIHVHNGKEFVPIEIKPEMIGHYLGEFALTRKIVQHGSPGVGATRSSMFVAVK 133
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_PYRHO (30S ribosomal protein S19P OS=Pyrococcus horikoshii GN=rps19p PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 6.427e-28 Identity = 64/119 (53.78%), Postives = 85/119 (71.43%), Query Frame = -1 Query: 284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640 +MS +EL +L AR RR +RGL + L++K+R AK+ G+ +P+RTH R+MII+PEM+G I V+NGK F VEIKPEMIGHYL EF+ + K V+HG PGIGAT SS F+ +K Sbjct: 18 NMSLEELARLLPARQRRSLRRGLTPEQKKLLRKIRLAKK----GKYNKPIRTHCRDMIILPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPGIGATRSSMFVAVK 132
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_THEON (30S ribosomal protein S19P OS=Thermococcus onnurineus (strain NA1) GN=rps19p PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.096e-27 Identity = 61/119 (51.26%), Postives = 84/119 (70.59%), Query Frame = -1 Query: 284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640 +MS ++ KL AR RR +RGL + L++K+R AK+ G+ +P+RTH R+M+I+PEM+G I VYNGK F VEIK EMIGHYL EF+++ K V+HG PG+GAT SS F+ +K Sbjct: 19 NMSLEDFAKLLPARQRRSLKRGLSPEQKKLLRKIRLAKK----GKYNKPIRTHSRDMVILPEMVGMTIHVYNGKEFVPVEIKEEMIGHYLGEFALTRKIVQHGSPGVGATRSSMFVAIK 133
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_PYRKO (30S ribosomal protein S19P OS=Pyrococcus kodakaraensis GN=rps19p PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.432e-27 Identity = 61/119 (51.26%), Postives = 84/119 (70.59%), Query Frame = -1 Query: 284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640 +MS +E KL +R RR +RGL + L++K+R AK+ G+ +P+RTH R+MI++PEM+G I VYNGK F VEIK EMIGHYL EF+++ K V+HG PG+GAT SS F+ +K Sbjct: 19 NMSLEEFAKLLPSRQRRSLKRGLSPEQKKLLRKIRLAKK----GKYNKPIRTHSRDMIVLPEMVGMTIHVYNGKEFVPVEIKEEMIGHYLGEFAMTRKVVQHGSPGVGATRSSMFVAVK 133
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_METS3 (30S ribosomal protein S19P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps19p PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 2.442e-27 Identity = 56/119 (47.06%), Postives = 83/119 (69.75%), Query Frame = -1 Query: 284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640 DMS +E+++LF AR RR +RG + ++ K+RK +E +P +RTH R+MI++PEM+G+ G+YNG+ F +V I+PEMIG Y EF+ + + V+HG PG+GAT SS F+PLK Sbjct: 18 DMSLEEVMELFPARQRRSLKRGFLPRQQIVLDKMRKLNKEGSKDGRPVVIRTHCRDMIVLPEMVGTTFGIYNGQNFVEVTIEPEMIGCYFGEFAPTRQKVQHGDPGMGATRSSMFVPLK 136
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_METTH (30S ribosomal protein S19P OS=Methanobacterium thermoautotrophicum GN=rps19p PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 5.441e-27 Identity = 55/119 (46.22%), Postives = 83/119 (69.75%), Query Frame = -1 Query: 284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640 +M D+++KLF +R RR +RG + +++K+RK K+E +P +RTH R+MI++PEM+G G++NGK F +V+I+PEMIG Y EF+ + K V+HG PG+GAT S F+PLK Sbjct: 18 EMPLDDVIKLFPSRQRRSLKRGFLPRQKKVLEKIRKIKKEGKTEGRPPVIRTHCRDMIVLPEMVGMTFGIHNGKEFVEVKIQPEMIGCYFGEFAPTRKKVEHGDPGMGATRFSMFVPLK 136
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_THESM (30S ribosomal protein S19P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps19p PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 2.700e-26 Identity = 57/119 (47.90%), Postives = 86/119 (72.27%), Query Frame = -1 Query: 284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640 +MS ++L KL +R RR +RGL + L++K+R AK+ G+ +P+RTH R+M+I+PEM+G +I V+NGK F V+I+ EMIGHY+ EF+++ K V+HG PG+GAT SS F+ +K Sbjct: 19 NMSLEDLSKLLPSRQRRSLKRGLTPEQKKLLRKIRLAKK----GKYKKPIRTHSRDMVILPEMVGMMIYVHNGKEFVPVQIREEMIGHYIGEFALTRKRVQHGSPGVGATRSSMFVAIK 133
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_STAMF (30S ribosomal protein S19P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps19p PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 7.856e-26 Identity = 62/119 (52.10%), Postives = 80/119 (67.23%), Query Frame = -1 Query: 284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640 +M DE + L AR RR +RGL + L+ K+RK +++ G+K ++TH+R+MII+PEMIG I VYNGK F V I PEMIGHYL EFS + K V+HG PG+ AT SS FI LK Sbjct: 26 NMPMDEFIGLLPARQRRSLKRGLTMAQVKLLAKIRKVRQKKLTGKKAI-IKTHVRDMIILPEMIGLTIAVYNGKEFIPVRIVPEMIGHYLGEFSPTTKRVQHGEPGLKATRSSMFISLK 143
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_SULTO (30S ribosomal protein S19P OS=Sulfolobus tokodaii GN=rps19p PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.026e-25 Identity = 57/119 (47.90%), Postives = 81/119 (68.07%), Query Frame = -1 Query: 284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640 +M DE +KL +R RR ++G K L++K+RK RE G+ + ++TH+R+MII+PEM+G VYNGK F + ++ PEMIGHYL EFSI+ K V+HG PG+ AT SS F+ +K Sbjct: 24 NMPMDEFIKLLPSRQRRSLKKGFSDKQRRLLEKIRKYVRE---GKYSKTIKTHVRDMIILPEMVGLKFAVYNGKEFVEFQVVPEMIGHYLGEFSITTKKVEHGEPGLKATRSSLFLAMK 139
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_SULAC (30S ribosomal protein S19P OS=Sulfolobus acidocaldarius GN=rps19p PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.340e-25 Identity = 56/119 (47.06%), Postives = 81/119 (68.07%), Query Frame = -1 Query: 284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640 +M DE +KL +R RR +RG K L++K+RK RE G++ + ++TH+RNM+I+PEM+G VYNGK F + ++ PEMIG YL E+SI+ K V+HG PG+ AT SS F+ +K Sbjct: 24 NMPMDEFIKLLPSRQRRSLKRGFSDKQRRLLEKIRKISRE---GKQNKVIKTHVRNMVILPEMVGLRFAVYNGKEFVEFQVVPEMIGRYLGEYSITTKKVEHGEPGLKATKSSLFLAMK 139 The following BLAST results are available for this feature:
BLAST of CB304673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CB304673 ID=CB304673; Name=CB304673; organism=Citrus sinensis; type=EST; length=640bpback to top |