CB304673
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_METTP (30S ribosomal protein S19P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps19p PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.811e-22 Identity = 53/118 (44.92%), Postives = 79/118 (66.95%), Query Frame = -1 Query: 284 MSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 637 M +E+ +L +R RR +RGL ++ + KLR A+ A +THLR+ I++PEM+G ++ ++NGKTF +VEI PEMIGHYL E++++ V HG G+GAT SS+F+PLK Sbjct: 29 MRLEEIAELLPSRQRRTLRRGLSKEHRKFMAKLR-ARGTA---------KTHLRDAIVLPEMVGKVVEIHNGKTFQRVEIIPEMIGHYLGEYALTRARVIHGAAGVGATRSSKFVPLK 136
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_METBU (30S ribosomal protein S19P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps19p PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.089e-22 Identity = 54/119 (45.38%), Postives = 72/119 (60.50%), Query Frame = -1 Query: 284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640 +MS ++ +L A+ RR +RG ++++ R K E VRTH RNMII PEMIG + VYNGK F ++EI PEMIGH E+S + V HG G+GAT SS+F+PLK Sbjct: 28 EMSFEDFAELLPAKERRSIRRGFSDSQKGVLQQFRDGK---------ESVRTHFRNMIIFPEMIGKNLEVYNGKEFVKIEIMPEMIGHRFGEYSPTRNRVSHGSAGVGATRSSKFVPLK 137
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_METM7 (30S ribosomal protein S19P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps19p PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.002e-21 Identity = 45/119 (37.82%), Postives = 74/119 (62.18%), Query Frame = -1 Query: 284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640 +M + +++ +R RR RG+ L+ K++KA+R G++P +RTH R+ +I PEMIG G+YNGK F ++++ E +G +L E + + V+HG PG+GAT S F+P+K Sbjct: 43 EMPIKKFMEIVPSRQRRTMLRGITPNQRKLVMKIKKARRLTNRGKEPRVIRTHCRDFVITPEMIGLTFGIYNGKEFKEIKLVEETVGRFLGEMAPTRSVVQHGSPGMGATRGSMFVPIK 161
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_METM5 (30S ribosomal protein S19P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps19p PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 4.461e-21 Identity = 45/119 (37.82%), Postives = 74/119 (62.18%), Query Frame = -1 Query: 284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640 +M + +++ +R RR RG+ K L+ K++KA+R G++ +RTH R+ +I PEMIG G+YNGK F ++++ E +G +L E + + V+HG PG+GAT S F+P+K Sbjct: 43 EMPIKKFMEIVPSRQRRTMARGITPKQRKLVMKIKKARRLTNRGKEARVIRTHCRDFVITPEMIGLTFGIYNGKEFKEIKLVEETVGRFLGEMAPTRAVVQHGSPGMGATRGSMFVPIK 161
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_METM6 (30S ribosomal protein S19P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps19p PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 5.826e-21 Identity = 46/119 (38.66%), Postives = 72/119 (60.50%), Query Frame = -1 Query: 284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640 +M + +++ +R RR RG+ L+ K++KA+R G++P +RTH R+ +I PEMIG G+YNGK F V + E +G +L E + + V+HG PG+GAT S F+P+K Sbjct: 43 EMPIKKFMEIVPSRQRRTMLRGITPNQRKLVMKIKKARRLTNRGKEPRVIRTHCRDFVITPEMIGLTFGIYNGKEFKDVTLVEETVGRFLGEMAPTRAVVQHGSPGMGATRGSMFVPIK 161
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_METVS (30S ribosomal protein S19P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps19p PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 7.609e-21 Identity = 45/119 (37.82%), Postives = 73/119 (61.34%), Query Frame = -1 Query: 284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640 +M + +++ AR RR RG+ L+ K++KA+R G++P +RTH R+ +I PEMIG I +Y GK F ++++ E +G +L E + + V+HG PG+GAT S F+P+K Sbjct: 42 EMPIKKFIEIVPARQRRTMSRGITPNQRKLVMKIKKARRLVNRGKEPRVIRTHCRDFVITPEMIGLTISIYTGKQFKEIKLVEETLGRFLGEMAPTRGIVQHGSPGMGATRGSMFVPIK 160
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_METMP (30S ribosomal protein S19P OS=Methanococcus maripaludis GN=rps19p PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 9.938e-21 Identity = 45/119 (37.82%), Postives = 73/119 (61.34%), Query Frame = -1 Query: 284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640 +M + +++ +R RR RG+ K L+ K++KA+R G+ +RTH R+ +I PEMIG G+YNGK F ++++ E +G +L E + + V+HG PG+GAT S F+P+K Sbjct: 43 EMPIKKFMEIVPSRQRRTMARGITPKQRKLVMKIKKARRLTNRGKDARVIRTHCRDFVITPEMIGLTFGIYNGKEFKEIKLVEETVGRFLGEMAPTRGVVQHGSPGMGATRGSMFVPIK 161
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_METHJ (30S ribosomal protein S19P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps19p PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 2.892e-20 Identity = 52/118 (44.07%), Postives = 74/118 (62.71%), Query Frame = -1 Query: 284 MSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 637 MS ++L+ + +RARR+ RG L+ +R +RTH R+MII+PEMIG I +YNGK F +VE++PE + HYL EF+++ + V HG GIGAT SS+F+PLK Sbjct: 29 MSLEDLLPVMPSRARRKVLRGWTIGEEKLLSDIRS---------NGSRIRTHQRDMIILPEMIGREIEIYNGKEFIRVELQPESVFHYLGEFALTRRRVTHGSAGIGATRSSKFVPLK 137
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_METMA (30S ribosomal protein S19P OS=Methanosarcina mazei GN=rps19p PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 6.442e-20 Identity = 50/119 (42.02%), Postives = 73/119 (61.34%), Query Frame = -1 Query: 284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640 ++S +E +L +R RR +RG ++ + ++ K+ +RTH R+MII+PEMIG I V+NGK F VE++PEMIGH EF+ + V HG G+GAT SS+F+PLK Sbjct: 28 ELSLEEFAELLPSRERRSIKRGFTDGQKKVLHEFKEGKK----------IRTHHRDMIILPEMIGIAIEVHNGKEFVNVELQPEMIGHRFGEFAPTRSRVNHGSAGVGATRSSKFVPLK 136
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_METAC (30S ribosomal protein S19P OS=Methanosarcina acetivorans GN=rps19p PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.874e-19 Identity = 47/119 (39.50%), Postives = 73/119 (61.34%), Query Frame = -1 Query: 284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640 ++S +E +L +R RR +RG ++ + ++ K+ +RTH R+MII+PEMIG I ++NGK F V+++PEM+GH EF+ + V HG G+GAT SS+F+PLK Sbjct: 28 ELSLEEFAELLPSRERRSLKRGFTDGQKKVLHEFKEGKK----------IRTHHRDMIILPEMIGKTIEIHNGKGFVSVDLQPEMVGHRFGEFAPTRSRVSHGSAGVGATRSSKFVPLK 136 The following BLAST results are available for this feature:
BLAST of CB304673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CB304673 ID=CB304673; Name=CB304673; organism=Citrus sinensis; type=EST; length=640bpback to top |