CB304675

Overview
NameCB304675
Unique NameCB304675
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9921 contig Csv1_Contig9921:254..831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304675 vs. ExPASy Swiss-Prot
Match: IF5A1_NICPL (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia GN=EIF-5A1 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 7.948e-45
Identity = 85/99 (85.86%), Postives = 92/99 (92.93%), Query Frame = -1
Query:  282 VGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 578
            V IDIF GKKLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLTE GNTKDDLRLPTD+NLL+ IKDGFAEGKDLV++VMS+MGEEQIC +KD+GPK
Sbjct:   61 VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159          
BLAST of CB304675 vs. ExPASy Swiss-Prot
Match: IF5A3_SOLTU (Eukaryotic translation initiation factor 5A-3 OS=Solanum tuberosum GN=EIF5A3 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.038e-44
Identity = 87/100 (87.00%), Postives = 93/100 (93.00%), Query Frame = -1
Query:  279 VGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPKN 578
            V IDIFNGKKLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLTE+GNTKDDLRLPTDE+LL Q+KDGF EGKDLVV+VMS+MGEEQI A+KDIG KN
Sbjct:   61 VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTDESLLKQVKDGFQEGKDLVVSVMSAMGEEQINAIKDIGTKN 160          
BLAST of CB304675 vs. ExPASy Swiss-Prot
Match: IF5A_MAIZE (Eukaryotic translation initiation factor 5A OS=Zea mays GN=TIF5A PE=1 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 1.148e-43
Identity = 84/99 (84.85%), Postives = 90/99 (90.91%), Query Frame = -1
Query:  282 VGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 578
            V IDIFNGKKLEDIVPSSHNCD PHV RT+YQLIDISEDGFVSLLT  GNTKDDLRLPTDE L++QIK+GF  GKDLVVTV S+MGEEQICALKD+GPK
Sbjct:   62 VAIDIFNGKKLEDIVPSSHNCDIPHVNRTEYQLIDISEDGFVSLLTSDGNTKDDLRLPTDETLVAQIKEGFESGKDLVVTVQSAMGEEQICALKDVGPK 160          
BLAST of CB304675 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLTU (Eukaryotic translation initiation factor 5A-1/2 OS=Solanum tuberosum GN=EIF5A1 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.499e-43
Identity = 84/100 (84.00%), Postives = 92/100 (92.00%), Query Frame = -1
Query:  279 VGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPKN 578
            V IDIFNGKKLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLTE GNTKDDLRLPTD+ LL+Q+K GF EGKDLV++VMS+MGEEQICA+KDIG K+
Sbjct:   61 VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDALLNQVKGGFEEGKDLVLSVMSAMGEEQICAVKDIGTKS 160          
BLAST of CB304675 vs. ExPASy Swiss-Prot
Match: IF5A4_SOLLC (Eukaryotic translation initiation factor 5A-4 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 5.696e-43
Identity = 83/99 (83.84%), Postives = 90/99 (90.91%), Query Frame = -1
Query:  282 VGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 578
            V IDIFN KKLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLTE GNTKDDLRLPTD+ LL+Q+K GF EGKDLV++VMS+MGEEQICA+KDIG K
Sbjct:   61 VAIDIFNAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLNQVKGGFEEGKDLVLSVMSAMGEEQICAVKDIGTK 159          
BLAST of CB304675 vs. ExPASy Swiss-Prot
Match: IF5A1_MEDSA (Eukaryotic translation initiation factor 5A-1 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 7.439e-43
Identity = 85/101 (84.16%), Postives = 93/101 (92.08%), Query Frame = -1
Query:  279 VGIDIFNGKKLEDI-VPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPKN 578
            V IDIF  KKLE++ VPSSHNCD PHV RTDYQLIDISEDGFVSLLTE GNTKDDL+LPTD++LL+QIKDGFAEGKDLVV+VMS+MGEEQICALKDIG KN
Sbjct:   61 VAIDIFTSKKLEEVYVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLKLPTDDSLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGGKN 161          
BLAST of CB304675 vs. ExPASy Swiss-Prot
Match: IF5A3_ARATH (Eukaryotic translation initiation factor 5A-3 OS=Arabidopsis thaliana GN=At1g69410 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.082e-41
Identity = 78/99 (78.79%), Postives = 90/99 (90.91%), Query Frame = -1
Query:  282 VGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 578
            V IDIF  KKLEDIVPSSHNCD PHV R DYQLIDISEDGFVSLLT+ G+TKDDL+LPTDE LL+Q+K+GF EGKD+VV+VMS+MGEEQ+CALK++GPK
Sbjct:   60 VAIDIFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDEALLTQLKNGFEEGKDIVVSVMSAMGEEQMCALKEVGPK 158          
BLAST of CB304675 vs. ExPASy Swiss-Prot
Match: IF5A1_ARATH (Eukaryotic translation initiation factor 5A-1 OS=Arabidopsis thaliana GN=At1g13950 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 5.894e-40
Identity = 79/99 (79.80%), Postives = 87/99 (87.88%), Query Frame = -1
Query:  282 VGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 578
            V IDIF  KKLEDIVPSSHNCD PHV RTDYQLIDISEDG+VSLLT+ G+TKDDL+LP D+ LL QIK GF +GKDLVV+VMS+MGEEQI ALKDIGPK
Sbjct:   60 VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPNDDTLLQQIKSGFDDGKDLVVSVMSAMGEEQINALKDIGPK 158          
BLAST of CB304675 vs. ExPASy Swiss-Prot
Match: IF5A_DIACA (Eukaryotic translation initiation factor 5A OS=Dianthus caryophyllus PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 7.205e-38
Identity = 71/96 (73.96%), Postives = 86/96 (89.58%), Query Frame = -1
Query:  291 VGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDI 578
            V IDIFNGKKLEDIVPSSHNCD PHV R DYQL+DI+EDGFVSLLT++G+TKDDL+LP DE L+ Q+K+GF  GKDL+++VM +MGEEQICA+KD+
Sbjct:   61 VAIDIFNGKKLEDIVPSSHNCDVPHVNRVDYQLLDITEDGFVSLLTDSGDTKDDLKLPADEALVKQMKEGFEAGKDLILSVMCAMGEEQICAVKDV 156          
BLAST of CB304675 vs. ExPASy Swiss-Prot
Match: IF5A2_ARATH (Eukaryotic translation initiation factor 5A-2 OS=Arabidopsis thaliana GN=At1g26630 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 7.205e-38
Identity = 73/97 (75.26%), Postives = 86/97 (88.66%), Query Frame = -1
Query:  288 VGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIG 578
            V IDIF  KKLEDIVPSSHNCD PHV R DYQLIDI+EDGFVSLLT++G TKDDL+LPTD+ L +Q++ GF EGKD+VV+VMSSMGEEQICA+K++G
Sbjct:   60 VAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTDDGLTAQMRLGFDEGKDIVVSVMSSMGEEQICAVKEVG 156          
The following BLAST results are available for this feature:
BLAST of CB304675 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IF5A1_NICPL7.948e-4585.86Eukaryotic translation initiation factor 5A-1 OS=N... [more]
IF5A3_SOLTU1.038e-4487.00Eukaryotic translation initiation factor 5A-3 OS=S... [more]
IF5A_MAIZE1.148e-4384.85Eukaryotic translation initiation factor 5A OS=Zea... [more]
IF5A1_SOLTU1.499e-4384.00Eukaryotic translation initiation factor 5A-1/2 OS... [more]
IF5A4_SOLLC5.696e-4383.84Eukaryotic translation initiation factor 5A-4 OS=S... [more]
IF5A1_MEDSA7.439e-4384.16Eukaryotic translation initiation factor 5A-1 OS=M... [more]
IF5A3_ARATH4.082e-4178.79Eukaryotic translation initiation factor 5A-3 OS=A... [more]
IF5A1_ARATH5.894e-4079.80Eukaryotic translation initiation factor 5A-1 OS=A... [more]
IF5A_DIACA7.205e-3873.96Eukaryotic translation initiation factor 5A OS=Dia... [more]
IF5A2_ARATH7.205e-3875.26Eukaryotic translation initiation factor 5A-2 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_C08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_C08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304675 ID=CB304675; Name=CB304675; organism=Citrus sinensis; type=EST; length=578bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGATAAAATAGTAAAATATAT
ATAAGTCCGAGATGCTGTCAACATAAATTTCGTTCAACAGGAGATTGACG
ACACCTGCTTTCTTTCCACTTCCCTTATCACAAGCACGACGATATTTTAA
TACACAGCCAAAATACTATCTTAATGGAAGTTTGTTGTGGACATGGATGG
TAGATAGTCTCCATGTTGGCAACATAAGAAAGAGTTCTCCTGCTATCAGC
CAAAGCTAATGCCATGGGATTATAGTTAATTCTTAGGACCAATGTCCTTA
AGGGCACAGATCTGCTCCTCTCCCATTGACGACATAACGGTCACCACAAG
GTCTTTTCCTTCAGCAAACCCATCTTTAATCTGGCTAAGCAGATTTTCAT
CGGTAGGAAGCCTCAGATCATCCTTGGTGTTTCCGGTTTCAGTTAAAAGG
CTCACAAAACCATCTTCGGATATATCAATCAGCTGATAGTCAGTGCGAGT
AACATGGGGAGCATCACAATTGTGGGAGGAAGGCACAATATCTTCAAGCT
TCTTTCCATTAAATATATCAATTCCCAC
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