CB304675

Overview
NameCB304675
Unique NameCB304675
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9921 contig Csv1_Contig9921:254..831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304675 vs. ExPASy Swiss-Prot
Match: IF5A2_HUMAN (Eukaryotic translation initiation factor 5A-2 OS=Homo sapiens GN=EIF5A2 PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 3.972e-20
Identity = 51/94 (54.26%), Postives = 68/94 (72.34%), Query Frame = -1
Query:  297 VGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALK 578
            VGIDIF GKK EDI PS+HN D P++ R DYQLI I +DG++SLLTETG  ++DL+LP  E L  +I+  +  G+D+ V+VM +M EE   A+K
Sbjct:   59 VGIDIFTGKKYEDICPSTHNMDVPNIKRNDYQLICI-QDGYLSLLTETGEVREDLKLPEGE-LGKEIEGKYNAGEDVQVSVMCAMSEEYAVAIK 150          
BLAST of CB304675 vs. ExPASy Swiss-Prot
Match: IF5A2_CHICK (Eukaryotic translation initiation factor 5A-2 OS=Gallus gallus GN=EIF5A2 PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 8.849e-20
Identity = 49/94 (52.13%), Postives = 70/94 (74.47%), Query Frame = -1
Query:  297 VGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALK 578
            VGIDIFNGKK EDI PS+HN D P++ R DYQLI I +DG++SLLTE+G  ++DL+LP + +L  +I+  F   +D+ ++V+S+M EE   A+K
Sbjct:   59 VGIDIFNGKKYEDICPSTHNMDVPNIKRNDYQLIGI-QDGYLSLLTESGEVREDLKLP-EGDLGKEIEGKFNANEDVQISVISAMNEECAVAIK 150          
BLAST of CB304675 vs. ExPASy Swiss-Prot
Match: IF5A1_RABIT (Eukaryotic translation initiation factor 5A-1 OS=Oryctolagus cuniculus GN=EIF5A PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 4.392e-19
Identity = 46/94 (48.94%), Postives = 70/94 (74.47%), Query Frame = -1
Query:  297 VGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALK 578
            VGIDIF GKK EDI PS+HN D P++ R D+QLI I +DG++SLL ++G  ++DLRLP + +L  +I+  +  G+++++TV+S+M EE   A+K
Sbjct:   59 VGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLP-EGDLGKEIEQKYDSGEEILITVLSAMTEEAAVAIK 150          
BLAST of CB304675 vs. ExPASy Swiss-Prot
Match: IF5A1_RAT (Eukaryotic translation initiation factor 5A-1 OS=Rattus norvegicus GN=Eif5a PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 1.278e-18
Identity = 46/94 (48.94%), Postives = 70/94 (74.47%), Query Frame = -1
Query:  297 VGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALK 578
            VGIDIF GKK EDI PS+HN D P++ R D+QLI I +DG++SLL ++G  ++DLRLP + +L  +I+  +  G+++++TV+S+M EE   A+K
Sbjct:   59 VGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLP-EGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of CB304675 vs. ExPASy Swiss-Prot
Match: IF5A1_MOUSE (Eukaryotic translation initiation factor 5A-1 OS=Mus musculus GN=Eif5a PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.278e-18
Identity = 46/94 (48.94%), Postives = 70/94 (74.47%), Query Frame = -1
Query:  297 VGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALK 578
            VGIDIF GKK EDI PS+HN D P++ R D+QLI I +DG++SLL ++G  ++DLRLP + +L  +I+  +  G+++++TV+S+M EE   A+K
Sbjct:   59 VGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLP-EGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of CB304675 vs. ExPASy Swiss-Prot
Match: IF5A1_HUMAN (Eukaryotic translation initiation factor 5A-1 OS=Homo sapiens GN=EIF5A PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.278e-18
Identity = 46/94 (48.94%), Postives = 70/94 (74.47%), Query Frame = -1
Query:  297 VGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALK 578
            VGIDIF GKK EDI PS+HN D P++ R D+QLI I +DG++SLL ++G  ++DLRLP + +L  +I+  +  G+++++TV+S+M EE   A+K
Sbjct:   59 VGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLP-EGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of CB304675 vs. ExPASy Swiss-Prot
Match: IF5A1_BOVIN (Eukaryotic translation initiation factor 5A-1 OS=Bos taurus GN=EIF5A PE=2 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 1.278e-18
Identity = 46/94 (48.94%), Postives = 70/94 (74.47%), Query Frame = -1
Query:  297 VGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALK 578
            VGIDIF GKK EDI PS+HN D P++ R D+QLI I +DG++SLL ++G  ++DLRLP + +L  +I+  +  G+++++TV+S+M EE   A+K
Sbjct:   59 VGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLP-EGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of CB304675 vs. ExPASy Swiss-Prot
Match: IF5AL_HUMAN (Eukaryotic translation initiation factor 5A-1-like OS=Homo sapiens GN=EIF5AL1 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 2.847e-18
Identity = 46/94 (48.94%), Postives = 69/94 (73.40%), Query Frame = -1
Query:  297 VGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALK 578
            VGIDIF GKK EDI PS+HN D P++ R D+QLI I +DG++SLL ++G   +DLRLP + +L  +I+  +  G+++++TV+S+M EE   A+K
Sbjct:   59 VGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVPEDLRLP-EGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of CB304675 vs. ExPASy Swiss-Prot
Match: IF5A_NEUCR (Eukaryotic translation initiation factor 5A OS=Neurospora crassa GN=tif-51 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 4.545e-16
Identity = 47/100 (47.00%), Postives = 62/100 (62.00%), Query Frame = -1
Query:  279 VGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPKN 578
            V IDIF GKKLED+ PS+HN D P+V RTDYQ   I ED F+ L+   G  K D+++P  E L  +I+    EGKD  V V ++MGEE    +K+   K+
Sbjct:   66 VAIDIFTGKKLEDLCPSTHNMDVPNVKRTDYQFSYIDED-FLVLIDSNGEEKRDVKMPEGE-LAKRIEKLEEEGKDFFVGVQTAMGEEAAIDVKEASNKD 163          
BLAST of CB304675 vs. ExPASy Swiss-Prot
Match: IF5A_DICDI (Eukaryotic translation initiation factor 5A OS=Dictyostelium discoideum GN=eif5a PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 7.752e-16
Identity = 41/92 (44.57%), Postives = 66/92 (71.74%), Query Frame = -1
Query:  297 IDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALK 572
            IDIF GKK E+I PS+HN D P+V+R +Y ++D+ +DG++SLL   G  K+DL LP D+ +  +I     EGK+ +V+V+S++G+E + ++K
Sbjct:   66 IDIFTGKKYEEICPSTHNIDVPNVSRKEYTVMDV-QDGYLSLLDAGGEVKEDLALPEDD-IGKEITQMLKEGKEPLVSVISALGKEGVVSVK 155          
The following BLAST results are available for this feature:
BLAST of CB304675 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IF5A2_HUMAN3.972e-2054.26Eukaryotic translation initiation factor 5A-2 OS=H... [more]
IF5A2_CHICK8.849e-2052.13Eukaryotic translation initiation factor 5A-2 OS=G... [more]
IF5A1_RABIT4.392e-1948.94Eukaryotic translation initiation factor 5A-1 OS=O... [more]
IF5A1_RAT1.278e-1848.94Eukaryotic translation initiation factor 5A-1 OS=R... [more]
IF5A1_MOUSE1.278e-1848.94Eukaryotic translation initiation factor 5A-1 OS=M... [more]
IF5A1_HUMAN1.278e-1848.94Eukaryotic translation initiation factor 5A-1 OS=H... [more]
IF5A1_BOVIN1.278e-1848.94Eukaryotic translation initiation factor 5A-1 OS=B... [more]
IF5AL_HUMAN2.847e-1848.94Eukaryotic translation initiation factor 5A-1-like... [more]
IF5A_NEUCR4.545e-1647.00Eukaryotic translation initiation factor 5A OS=Neu... [more]
IF5A_DICDI7.752e-1644.57Eukaryotic translation initiation factor 5A OS=Dic... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_C08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_C08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304675 ID=CB304675; Name=CB304675; organism=Citrus sinensis; type=EST; length=578bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGATAAAATAGTAAAATATAT
ATAAGTCCGAGATGCTGTCAACATAAATTTCGTTCAACAGGAGATTGACG
ACACCTGCTTTCTTTCCACTTCCCTTATCACAAGCACGACGATATTTTAA
TACACAGCCAAAATACTATCTTAATGGAAGTTTGTTGTGGACATGGATGG
TAGATAGTCTCCATGTTGGCAACATAAGAAAGAGTTCTCCTGCTATCAGC
CAAAGCTAATGCCATGGGATTATAGTTAATTCTTAGGACCAATGTCCTTA
AGGGCACAGATCTGCTCCTCTCCCATTGACGACATAACGGTCACCACAAG
GTCTTTTCCTTCAGCAAACCCATCTTTAATCTGGCTAAGCAGATTTTCAT
CGGTAGGAAGCCTCAGATCATCCTTGGTGTTTCCGGTTTCAGTTAAAAGG
CTCACAAAACCATCTTCGGATATATCAATCAGCTGATAGTCAGTGCGAGT
AACATGGGGAGCATCACAATTGTGGGAGGAAGGCACAATATCTTCAAGCT
TCTTTCCATTAAATATATCAATTCCCAC
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