CB304675

Overview
NameCB304675
Unique NameCB304675
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9921 contig Csv1_Contig9921:254..831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304675 vs. ExPASy Swiss-Prot
Match: IF5A1_CHICK (Eukaryotic translation initiation factor 5A-1 OS=Gallus gallus GN=EIF5A1 PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 1.462e-14
Identity = 40/78 (51.28%), Postives = 57/78 (73.08%), Query Frame = -1
Query:  345 VGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLV 578
            VGIDIF GKK EDI PS+HN D P++ R D+QLI I +DGF+SLL ++G  ++DLRLP  E L  +I+  +  G++++
Sbjct:   59 VGIDIFTGKKYEDICPSTHNMDVPNIKRCDFQLIGI-QDGFLSLLQDSGEVREDLRLPEGE-LGREIEQKYDCGEEII 134          
BLAST of CB304675 vs. ExPASy Swiss-Prot
Match: IF5A2_CAEEL (Eukaryotic translation initiation factor 5A-2 OS=Caenorhabditis elegans GN=iff-2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.757e-13
Identity = 46/96 (47.92%), Postives = 63/96 (65.62%), Query Frame = -1
Query:  297 VGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLL-TETGNTKDDLRLPTDENLLSQIKDGFAEGK-DLVVTVMSSMGEEQICALK 578
            V IDIF  KKLEDI PS+HN D P V R +Y L+ I +DG+ SL+  E+   KDDL+LP D  L  QI+D + + +  ++V V+S++GEE I   K
Sbjct:   63 VAIDIFTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLP-DTELGQQIRDAYEKDEGSVLVQVVSAIGEEAILGWK 156          
BLAST of CB304675 vs. ExPASy Swiss-Prot
Match: IF5A1_CAEEL (Eukaryotic translation initiation factor 5A-1 OS=Caenorhabditis elegans GN=iff-1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.581e-11
Identity = 43/96 (44.79%), Postives = 62/96 (64.58%), Query Frame = -1
Query:  297 VGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLL-TETGNTKDDLRLPTDENLLSQIKDGFAEGK-DLVVTVMSSMGEEQICALK 578
            V IDIF  KKLEDI PS+HN D P V R +Y L+ I EDGF SL+  E+   KDDL++P + +L + I++   + +  ++V V+++ GEE I   K
Sbjct:   63 VAIDIFTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKMP-EGDLGNTIREALEKDEGSVLVQVVAACGEEAILGYK 156          
The following BLAST results are available for this feature:
BLAST of CB304675 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IF5A1_CHICK1.462e-1451.28Eukaryotic translation initiation factor 5A-1 OS=G... [more]
IF5A2_CAEEL2.757e-1347.92Eukaryotic translation initiation factor 5A-2 OS=C... [more]
IF5A1_CAEEL2.581e-1144.79Eukaryotic translation initiation factor 5A-1 OS=C... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_C08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_C08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304675 ID=CB304675; Name=CB304675; organism=Citrus sinensis; type=EST; length=578bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGATAAAATAGTAAAATATAT
ATAAGTCCGAGATGCTGTCAACATAAATTTCGTTCAACAGGAGATTGACG
ACACCTGCTTTCTTTCCACTTCCCTTATCACAAGCACGACGATATTTTAA
TACACAGCCAAAATACTATCTTAATGGAAGTTTGTTGTGGACATGGATGG
TAGATAGTCTCCATGTTGGCAACATAAGAAAGAGTTCTCCTGCTATCAGC
CAAAGCTAATGCCATGGGATTATAGTTAATTCTTAGGACCAATGTCCTTA
AGGGCACAGATCTGCTCCTCTCCCATTGACGACATAACGGTCACCACAAG
GTCTTTTCCTTCAGCAAACCCATCTTTAATCTGGCTAAGCAGATTTTCAT
CGGTAGGAAGCCTCAGATCATCCTTGGTGTTTCCGGTTTCAGTTAAAAGG
CTCACAAAACCATCTTCGGATATATCAATCAGCTGATAGTCAGTGCGAGT
AACATGGGGAGCATCACAATTGTGGGAGGAAGGCACAATATCTTCAAGCT
TCTTTCCATTAAATATATCAATTCCCAC
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